Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq25 122 7e-23 seq104 111 1e-19 >seq25 Length=3544016 Score = 122 bits (134), Expect = 7e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 |||| |||||||||||||||| || || || || ||||| || || || || |||| Sbjct 2908220 AAGAGAAACATTTTATATCTTACGTCTTAGCATTCTTTGCCGCTTCTGATGGAATTGTCA 2908161 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 |||| ||| | || || ||| |||||||| ||| || |||||||||| || || | Sbjct 2908160 ATGAGAATCTCGTCGAACGATTTAGTCAAGAAGTACAAATAACAGAAGCACGTTGCTTCT 2908101 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 |||| |||||||| ||||| |||||| | || || |||||||| | | | || |||| Sbjct 2908100 ATGGCTTTCAAATCGCCATGGAAAATGTACACTCAGAAATGTATTCTTTATTAATTGATA 2908041 Query 44007 CGTACATCAAAGATG 44021 | || ||| ||||| Sbjct 2908040 CATATATCGCAGATG 2908026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || || | ||||||||| ||||||||| || || || ||||||| | |||||| ||| Sbjct 2908435 TTACTGAAAGAAAATCCACGTAGGTTTGTTGTTTTCCCTATTCAATGGCCTGACATTTGG 2908376 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 ||||||||||||||||| | || || |||||||| | || ||||| ||| | ||||| Sbjct 2908375 CAAATGTACAAAAAAGCGGAAGCCTCTTTTTGGACTGTGGAGGAAGTGGATCTCTCTAAA 2908316 Query 43796 G 43796 | Sbjct 2908315 G 2908315 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| ||||||||||||||||| |||| || |||||||| |||||||| ||||| |||| Sbjct 2907194 AAAATCCGTTTGATTTTATGGAGCATATCTCTTTGGAAGGTAAAACAAATTTTTTCGAAA 2907135 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGG 44580 || || |||||||||||| |||||| Sbjct 2907134 AAAAGGTGGGAGAATATCAG-AAATGGG 2907108 >seq104 Length=1444537 Score = 111 bits (122), Expect = 1e-19 Identities = 211/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| || | || | ||| |||||| ||| || || || || || || Sbjct 1229258 CCAGATTGGGATTTTCAAAAAATGGGAATTGGCGGACTGGACAAGGAATTCAGTGCTATT 1229199 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 ||||| |||||||| | ||| || || ||| | |||| | ||| ||||||||||||| Sbjct 1229198 TTTCGAAGAGCATTCGCGTCACGAGTGTTTCCACCAGAAATTGTTACACAATTGGGATGT 1229139 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 || ||||| ||| |||| |||||||| ||||| ||| || ||||| ||||| || Sbjct 1229138 AAGCATGTGAAAGGAATTTTACTTTATGGTCCACCTGGTACAGGTAAAACGTTAATGGCA 1229079 Query 19396 AG--AGA-ACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || ||| | | || ||| | | | | | ||| ||||| || ||||| ||| | Sbjct 1229078 AGGCAGATAGGGACTATGTTAAATGCTAGAGAGCCT---AAAATCGTCAATGGCCCTCAG 1229022 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || || |||||||||| || || |||| ||| | | | || |||||||| || Sbjct 1229021 ATTTTGGATAAATATGTTGGAGAAAGTGAAGCTAATATTAGGAGATTATTTGCTGATGCC 1228962 Query 19513 GAAGAAGA 19520 ||||| || Sbjct 1228961 GAAGAGGA 1228954 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||| || || |||||||| ||||| || || ||||| | || ||||| | ||||| Sbjct 1228761 GGAGTTCACGATACTGTTGTAAATCAGCTGCTCGCAAAAATTGATGGTGTGGAACAACTA 1228702 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 ||||||||| | |||||||| |||||||| ||| || | || || || |||||| Sbjct 1228701 AATAATATTCTTGTTATTGGTATGACTAACAGAAGAGATATGATTGATGAAGCTTTATTA 1228642 Query 19732 CGACCCGGTCGGTTGGA 19748 ||||| ||| | || || Sbjct 1228641 CGACCTGGTAGATTAGA 1228625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442117110330