Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq190 122 7e-23 seq64 95.1 1e-14 seq65 82.4 6e-11 >seq190 Length=691288 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||||||||| || | ||||| ||||| ||||||||||| || Sbjct 255067 TGCCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCTG 255008 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | ||||| | |||||||| || |||| | |||||| || || || | Sbjct 255007 AGAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGGAG 254948 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || |||||| ||||| |||||| ||||| | ||||||| Sbjct 254947 GAATTCCCTCTTTGTCTTGGATCTTTGCTTTCACATTTTCTATTGTGTCAGAAGCTTCAA 254888 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| ||||| |||| ||| || || | || || |||||||| |||||| Sbjct 254887 CTTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCATA 254838 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | |||||||||||||| | ||||| || ||||| |||||||| || Sbjct 260526 TGCCTCCTCGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCCG 260467 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | ||||| | || || || || |||| | ||| ||||| || || | Sbjct 260466 AAAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGAG 260407 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || |||||||| ||| || ||||| | |||| || |||| |||||| | Sbjct 260406 GAATTCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCTATTGTATCTGAGGCTTCTA 260347 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| |||| ||| || || || ||||| ||||| |||||||| Sbjct 260346 CCTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAAATTTGCAT 260298 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||||||||||| | ||||| || ||||| ||||| || || Sbjct 255523 TGCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCG 255464 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | ||||| | ||||| || || |||| ||||| |||||||| || | Sbjct 255463 AAAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGG 255404 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || || || || | | |||| ||||||| || || | Sbjct 255403 GAATTCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTA 255344 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || ||||| |||| ||| || || || ||||| |||||||| |||||| Sbjct 255343 CCTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATA 255294 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||||||||||||| | ||||| || ||||| ||||| || || | | | | | Sbjct 255281 CGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAAAGAGTTCTCCCA 255222 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || |||| ||||| |||||||| || || | || ||||| Sbjct 255221 TCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGAATTCCTTCTTTG 255162 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || || | | |||| ||||||| || || || || ||||| ||| Sbjct 255161 TCTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCAAGAGTAATA 255102 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || || ||||| |||||||| ||||| Sbjct 255101 GTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255067 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | | |||||| | ||| | || || ||||| || || || || || Sbjct 256207 TGCCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCTG 256148 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | | || || | ||||||||| ||| | || | |||||| || || || | Sbjct 256147 ACAGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGAG 256088 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || || || ||||| | |||| ||||||| ||||| | Sbjct 256087 GAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCTA 256028 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||| || || | ||| || |||| ||||| |||||||||||||| Sbjct 256027 CTTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 255979 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCT 27095 || || ||||| | ||||| || |||||||| ||||| || || | | | ||| Sbjct 256418 AAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAACAAAGTTCTTCCATCT 256359 Query 27096 TCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCG 27155 || | ||| || || || | || | ||| || ||||| || || | || ||||| || Sbjct 256358 TCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCT 256299 Query 27156 GCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGAT 27215 || || ||||| | |||||| ||||| | ||||| ||||| | ||| || | | Sbjct 256298 TGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTACTTCCAAAGTGATGGTT 256239 Query 27216 TTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || |||||||||||||| Sbjct 256238 TTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 256207 >seq64 Length=2955609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 192/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 131210 GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTT 131269 ||||| ||||| || || ||||| | || ||| | ||||||| ||| || | Sbjct 1697327 GGATAGTAGTTAACATCGATAATTTTATCTAGATTACAAGTAACAATTTTTGTAAC---T 1697271 Query 131270 TTCAA---TTTGTCGAAATCAAACGTGCCAGTTTCGAGG-TTTACAAATTGATTTACACA 131325 | ||| ||| | |||||||| || | | || |||| |||||||| ||| || Sbjct 1697270 TGCAAAAGTTTTTGAAAATCAAATGTTCGA-TTGAGAGGATTTACAAACATATTGACCGC 1697212 Query 131326 TATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGC 131385 ||||| |||| |||||| || || |||| || | | || |||| || ||||| | Sbjct 1697211 GATTGAAGCCAAATTACACACAGCGATTTCATCTGGACTGGAAAACTGTACGATTTCTGT 1697152 Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG 131445 ||||||||||| || || || || || | |||||| ||||| |||| ||| ||| Sbjct 1697151 ACACAAATTACTACTTTTGATTGTTCCTATATTTTGATGATTTGATTTACGATTGCAATG 1697092 Query 131446 GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAG 131486 || || || | ||| || || || || ||||| ||||||| Sbjct 1697091 ATCTTTATAAAGCATATAAGGAGTTCCTGTTTCAACTTGAG 1697051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 ||||| || || |||| ||| || | ||| | ||||| ||||| || | ||||| | | Sbjct 1697929 ATTTGGAATTCTCCAGACAGAACTCTTCTTGCATAAATATTGCTGGTATATGGTTCTATG 1697870 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 ||||| || || || || |||||||| |||| ||| || ||||| ||| | || || | Sbjct 1697869 GATTCATTATTTCCTAAAATTTGTGCAGTAGATGCTGTTGGCATAGGTGCAATTAGTAAA 1697810 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAG 130939 ||||| | || || || | | |||||| ||||| ||||| ||||| | Sbjct 1697809 GAATTTCTAATTCCATGTTTAGCAATTTTTTCTTTCAAAATTGTCCAATTCCATAAATCA 1697750 Query 130940 GTAGGTTTGACATTGTTCCACATATCAAATTGTA 130973 || || | ||||| |||||||||| |||||| Sbjct 1697749 GTTGGAGTAACATT---CCACATATCATATTGTA 1697719 >seq65 Length=2871674 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | || || || || |||||||||||||| | | || ||||||| Sbjct 612033 TACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAGTCTGAAAGTGTACGTCCGTCTTC 612092 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | || || |||||| | || | | || ||||| || || | || |||||||| Sbjct 612093 CAATTGCTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCTTCTTTATCTTG 612152 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| || ||| | | |||| | || |||| ||| |||||||| || || || | ||| Sbjct 612153 GATTTTTGCTTTAACGTTTTCAATCGTATCTGAGGCCTCAACTTCGAGTGTAATTGTTTT 612212 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || || || |||||||| Sbjct 612213 ACCAGTGAGAGTCTTGACGAAAATTTGCAT 612242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424919557306992