Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq65 105 5e-18 seq190 89.7 4e-13 >seq65 Length=2871674 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||||||||| || |||||| | || || ||| | Sbjct 612014 ATGCAAATTTTTGTAAAAACTCTTACTGGAAAGACTATTACCTTGGAGGTTGAAGCGTCT 611955 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| |||||| |||||| ||||| || || |||| || | Sbjct 611954 GATACCATTGAAAAT--GTCAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGATC 611897 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || |||||||| || |||||||| || | ||||| | |||||||| | Sbjct 611896 AGCAAAGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGACGCACACTTTCCGATTATA 611837 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| || ||| ||||| | ||| | |||||| | || || Sbjct 611836 ATATTCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || ||||| || || ||| |||||| |||| || || | | Sbjct 610875 AATGCAAATTTTCGTTAAGACTCTCACGGGTAAAACTATTACCCTTGAAGTTGAGGCCTC 610816 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| ||||| ||||| ||||| |||| || Sbjct 610815 TGACACAATTGAAAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGAC 610758 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | || ||||| || || ||||||||||| |||| ||||| | || ||||| Sbjct 610757 CAGCAGAGATTGATTTTCGCTGGCAAACAATTGGAAGACGGACGCACACTTTCTGATTAT 610698 Query 27967 AACATCCAAAAAGA 27980 ||||| |||||||| Sbjct 610697 AACATTCAAAAAGA 610684 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || ||||||||| ||||| || ||||| | || || || ||||| ||||||||||| Sbjct 611693 GATAAAGAAGGTATTCCGCCAGATCAGCAGAGATTGATCTTCGCCGGCAAACAATTGGAA 611634 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | |||||||| ||||||||||| || ||| ||||| | ||| | Sbjct 611633 GACGGACGCACACTTTCCGATTATAACATCCAAAAGGAATCAACTCTGCATCTTGTTCTT 611574 Query 28003 CGTTTGCGTGGCGG 28016 |||||| | || || Sbjct 611573 CGTTTGAGAGGAGG 611560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || ||||||||| ||||| || |||||| | || |||||||| ||||||||| | || Sbjct 611237 GATAAAGAAGGTATTCCGCCAGATCAGCAAAGATTGATTTTTGCTGGAAAACAACTTGAA 611178 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | || ||||| ||||||||||| || || | ||| | ||| || Sbjct 611177 GATGGACGCACACTTTCGGATTATAACATCCAAAAGGAATCAACCCTTCATCTTGTTCTG 611118 Query 28003 CGTTTGCGTGGCGG 28016 |||||| | || || Sbjct 611117 CGTTTGAGAGGAGG 611104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || ||||||||| ||||| || |||||| | || |||||||| ||||||||| | || Sbjct 611465 GATAAAGAAGGTATTCCGCCAGATCAGCAAAGATTGATTTTTGCTGGAAAACAACTTGAA 611406 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | || ||||| ||||||||||| || || | ||| | ||| || Sbjct 611405 GATGGACGCACACTTTCGGATTATAACATCCAAAAGGAATCAACCCTTCATCTTGTTCTG 611346 Query 28003 CGTTTGCGTGGCGG 28016 |||||| | || || Sbjct 611345 CGTTTGAGAGGAGG 611332 >seq190 Length=691288 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || ||| |||||| |||| || ||| | | Sbjct 260298 ATGCAAATTTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAAGCCTCA 260357 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || ||| ||||| || |||||||| |||| || | Sbjct 260358 GATACAATAGAGAAT--GTGAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGACC 260415 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || |||||||| || || ||||| || || | | | | | || ||||||| Sbjct 260416 AACAACGTTTGATTTTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCGGATTACA 260475 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | |||||||| || || | |||||||| ||||| | || || ||| Sbjct 260476 ATATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGAGGAGGC 260525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355849969948782