Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq65 95.1 1e-14 seq190 86.0 5e-12 >seq65 Length=2871674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||||| || || | || | ||| || || || |||| Sbjct 611773 ACGAAAATTTG--CATACCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTT 611830 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||||| |||||| ||| | || || | || ||||| ||||| || | | Sbjct 611831 GAATATTATAATCGGAAAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATC 611890 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACC 39219 ||||| || | || | | ||| |||||| ||| ||| || ||||| | | | Sbjct 611891 TTTGCTGATCTGGTGGAATTCCCTCCTTGTCC-TGAATTTTTGCTTTGACATTTTCAATG 611949 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 ||||| || || || |||| || ||| | ||||| || || ||||| ||||| ||| Sbjct 611950 GTATCAGACGCTTCAACCTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATT 612009 Query 39280 TGCAT 39284 ||||| Sbjct 612010 TGCAT 612014 >seq190 Length=691288 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || || ||||| ||||||||||| | ||| |||| | Sbjct 255281 CGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAAAGAGTTCTCCCA 255222 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||||| ||||| || ||||| || || || | ||| | | |||||| Sbjct 255221 TCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGAATTCCTTCTTTG 255162 Query 39190 TCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 | | ||| ||| || || | || | | || || | ||| || || | || || Sbjct 255161 T-CTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCAAGAGTAAT 255103 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || || ||||| |||||||| ||||| Sbjct 255102 AGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255067 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || || ||||| ||||||||||| | ||| |||| | Sbjct 255509 CGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATCCGAAAGAGTTCTCCCA 255450 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||||| ||||| || ||||| || || || | ||| | | |||||| Sbjct 255449 TCTTCTAATTGTTTGCCAGCAAAAATCAGACGTTGTTGATCAGGGGGAATTCCTTCTTTG 255390 Query 39190 TCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 | | ||| ||| || || | || | | || || | ||| || || | || || Sbjct 255389 T-CTTGAATTTTTGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACCTCAAGAGTAAT 255331 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || || ||||| |||||||| ||||| Sbjct 255330 AGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCAT 255295 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| ||||| |||||||| | || |||| | | || || | |||||| || || || Sbjct 256169 TCTTTCTGTATGTTATAATCTGACAGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAG 256110 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | |||||||||||| | || | | |||||||| ||||| ||| | || Sbjct 256109 ATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTC 256050 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || | || || || | |||||| ||||||| |||| ||||| ||| Sbjct 256049 TCTATTGTGTCTGAAGCTTCTACTTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACA 255990 Query 39274 AAGATTTGCAT 39284 ||||||||||| Sbjct 255989 AAGATTTGCAT 255979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429530596240658