Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq65 147 1e-30 seq190 131 1e-25 >seq65 Length=2871674 Score = 147 bits (162), Expect = 1e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || ||||| || || || |||||||| | | Sbjct 611786 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611727 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | || || ||||||||| | ||||||||||| Sbjct 611726 GACACAATTGAGAATGTTAAGGCCAAGA-TTCAGGATAAAGAAGGTATTCCGCCAGATCA 611668 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || |||||||||||| ||||||||| |||||| | |||||| || Sbjct 611667 GCAGAGATTGATCTTCGCCGGCAAACAATTGGAAGACGGACGCACACTTTCCGATTATAA 611608 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | ||| | ||| | | ||| ||||||| Sbjct 611607 CATCCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611560 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| || |||||||| ||||| || || || |||||||| || | Sbjct 610875 AATGCAAATTTTCGTTAAGACTCTCACGGGTAAAACTATTACCCTTGAAGTTGAGGCCTC 610816 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||| |||||| ||||| ||||| | || ||||| || Sbjct 610815 TGACACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCA 610756 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || ||||||||| ||||||||| |||||| | ||||| || Sbjct 610755 GCAGAGATTGATTTTCGCTGGCAAACAATTGGAAGACGGACGCACACTTTCTGATTATAA 610696 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| || || Sbjct 610695 CATTCAAAAAGAATCGAC 610678 Score = 132 bits (146), Expect = 3e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || ||||| || || || |||||||| | | Sbjct 611330 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611271 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | || || ||||||||| | ||||||||||| Sbjct 611270 GACACAATTGAGAATGTTAAGGCCAAGA-TTCAGGATAAAGAAGGTATTCCGCCAGATCA 611212 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 || | || || ||||| || |||||||| ||||| | ||| |||||| | ||||| Sbjct 611211 GCAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTTCG--GATTAT 611154 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| || || || | ||| | ||| | | ||| ||||||| Sbjct 611153 AACATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611104 Score = 132 bits (146), Expect = 3e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || ||||| || || || |||||||| | | Sbjct 611558 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611499 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | || || ||||||||| | ||||||||||| Sbjct 611498 GACACAATTGAGAATGTTAAGGCCAAGA-TTCAGGATAAAGAAGGTATTCCGCCAGATCA 611440 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 || | || || ||||| || |||||||| ||||| | ||| |||||| | ||||| Sbjct 611439 GCAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTTCG--GATTAT 611382 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| || || || | ||| | ||| | | ||| ||||||| Sbjct 611381 AACATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611332 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || ||||| || || || || ||||| | | Sbjct 611102 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAGGTTGAGGCTTCT 611043 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | || || |||||||| | || |||||||| Sbjct 611042 GACACAATTGAGAATGTTAAGGCCAAGA-TTCAAGATAAAGAAGGCATTCCACCAGATCA 610984 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || |||||||||||| | ||||| || || || || ||||| || Sbjct 610983 GCAGAGGTTGATCTTCGCCGGCAAACAATTAGAAGATGATCGTACATTGTCTGATTATAA 610924 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| ||||| || | ||| | ||| | | ||| |||||||| Sbjct 610923 TATCCAAAAGGAGTCAACCCTTCATCTTGTTCTTCGTTTGAGAGGAGGA 610875 Score = 111 bits (122), Expect = 1e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || ||||| || || ||||||||||| || | Sbjct 612242 ATGCAAATTTTCGTCAAGACTCTCACTGGTAAAACAATTACACTCGAAGTTGAGGCCTCA 612183 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| |||||| || |||||||| | || |||||||| Sbjct 612182 GATACGATTGAAAACGTTAAAGCAAAAATCCAAGATAAAGAAGGCATTCCACCAGATCAG 612123 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 || | || || || |||||||| ||| ||||||||| ||| |||||| || |||| Sbjct 612122 CAAAGATTGATCTTCGCCGGCAAGCAATTGGAAGACGGACGTACACTTT--CAGACTACA 612065 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || || || || Sbjct 612064 ATATTCAGAAGGAATCAAC 612046 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| || || ||||| || || || | || ||||| | | Sbjct 612014 ATGCAAATTTTTGTAAAAACTCTTACTGGAAAGACTATTACCTTGGAGGTTGAAGCGTCT 611955 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| ||||||| ||||| || || | || |||||||| Sbjct 611954 GATACCATTGAAAATGTCAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGATCAG 611895 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||||||||| ||| ||||||| | |||||| | |||||| || Sbjct 611894 CAAAGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGACGCACACTTTCCGATTATAAT 611835 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | ||| | ||| | | ||| ||||||| Sbjct 611834 ATTCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611788 >seq190 Length=691288 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| |||||||| |||||| | ||||| || | | Sbjct 256207 ATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATCACTTTGGAAGTAGAAGCTTCT 256266 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| |||||| ||||||||||| | || || ||||| Sbjct 256267 GACACAATAGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 256326 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || || || | ||||| | | | ||||| ||||||||| Sbjct 256327 CAACGTTTGATCTTTGCTGGGAAGCAGTTAGAAGATGGAAGAACTTTGTTGGATTACAAC 256386 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || ||| | |||||||||||||| | ||||| || Sbjct 256387 ATTCAAAAGGAATCTACACTCCATTTAGTTTTAAGACTCCGAGGTGG 256433 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| |||||||| || ||||| || || || | | Sbjct 255067 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255126 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| |||||| || ||||||||||| | || || ||||| Sbjct 255127 GACACAATAGAGAATGTTAAGGCAAAAA-TTCAAGACAAAGAAGGAATTCCCCCTGATCA 255185 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||||||| | ||||| | | ||| | ||||| || Sbjct 255186 ACAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAA 255245 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || ||| | ||||| || || Sbjct 255246 TATCCAAAAGGAATCTACACTCCATTTGGTATT 255278 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| |||||||| || ||||| || || || | | Sbjct 255295 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255354 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| |||||| || ||||||||||| | || || ||||| Sbjct 255355 GACACAATAGAGAATGTTAAGGCAAAAA-TTCAAGACAAAGAAGGAATTCCCCCTGATCA 255413 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||||||| | ||||| | | ||| | ||||| || Sbjct 255414 ACAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAA 255473 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || ||| | ||||| || || Sbjct 255474 TATCCAAAAGGAATCTACACTCCATTTGGTATT 255506 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| ||||| || || || ||||| | ||||| || | | Sbjct 255751 ATGCAGATTTTTGTTAAAACGCTCACAGGTAAGACCATCACCTTGGAAGTAGAAGCTTCT 255810 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| |||||| ||||||||||| | || || || || Sbjct 255811 GACACAATAGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGACCAG 255870 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| || || || |||||| | || || | | ||| | ||||| ||| Sbjct 255871 CAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTGTCAGATTATAAC 255930 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || ||| | ||| | ||||| || | |||||||| Sbjct 255931 ATTCAGAAAGAATCAACACTCCATCTTGTTTTGAGACTTCGAGGAGG 255977 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| |||||||| || |||||||| || || | | Sbjct 260070 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTCGAGGTAGAGGCTTCA 260129 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | |||| || ||||||||||| | || || || || Sbjct 260130 GACACAATAGAGAATGTTAAGGCGAAAA-TTCAAGACAAAGAAGGAATTCCTCCTGACCA 260188 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || |||||||| || || || |||||| | || || | | ||| | || ||||| Sbjct 260189 GCAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTTTCGGACTACAA 260248 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||||| || || || | |||||||| Sbjct 260249 CATTCAGAAGGAGTCTACTCTCCATTTGGTGTTGAGACTTCGAGGAGG 260296 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || |||||||| ||||| | ||||| || | | Sbjct 255979 ATGCAAATCTTTGTCAAAACATTGACAGGAAAAACCATCACGTTAGAAGTAGAAGCTTCA 256038 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| || ||||||||||| | || ||||| || Sbjct 256039 GACACAATAGAGAATGTGAAAGCTAAAA-TTCAAGACAAAGAAGGAATTCCTCCAGACCA 256097 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || || ||||| | || || | | | ||| | ||||| || Sbjct 256098 GCAGCGTTTGATCTTCGCTGGTAAACAGTTAGAGGATGGAAGAACTCTGTCAGATTATAA 256157 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| || ||| | ||| | || || || | |||||||| Sbjct 256158 CATACAGAAAGAATCAACACTTCATCTTGTATTGAGACTCCGAGGAGG 256205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997793535928