Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq25 89.7 4e-13 >seq25 Length=3544016 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/227 (70%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||| ||| || || ||| ||| || | ||| ||||| | |||||| |||| Sbjct 2907695 CTTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTT 2907754 Query 4630 TAAGCCAAAATATAGCGGCAAA--TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 | | ||| || ||||| ||||| || | | ||||| |||| ||||| || || ||||| Sbjct 2907755 TCAACCAGAAAATAGCAGCAAAACTGCCGCTGAAAA--ATATACCTTCCACTGCAGCAAA 2907812 Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTT---TAATCCATTTTAATGCCCA 4744 || |||| || ||||| |||| | || | | ||||| ||||||||||| Sbjct 2907813 TGCAACTACACGTTCAGGGAACG---TGGCACTTTCATGGTTTATCCAATTTAATGCCCA 2907869 Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | ||||||||| |||| || || | | | || || ||||||| Sbjct 2907870 CTGAGCTTTTTTTGTAACACATGGTAAATTCTCAATTGCATTAAATA 2907916 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 |||||| | ||| ||||| || ||||||||||| || |||||||||||||||||||| Sbjct 2908315 CTTTAGAGAGATCCACTTCCTCCACAGTCCAAAAAGAGGCTTCCGCTTTTTTGTACATTT 2908374 Query 5095 ACCAAATATCAGGATACTGAATCGG 5119 |||||| ||||| | ||||| || Sbjct 2908375 GCCAAATGTCAGGCCATTGAATAGG 2908399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427034683424378