Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq64 185 1e-41 seq25 114 2e-20 >seq64 Length=2955609 Score = 185 bits (204), Expect = 1e-41 Identities = 228/309 (74%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 77031 TGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTC 77090 || || |||||| || || ||||||| || || || || |||| ||| | | || Sbjct 1698022 TGTATAGAACCATTATTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCTT 1697963 Query 77091 TCTGTTAAAACTC-TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149 || |||| | ||| ||| || ||||| || || ||||| ||||||||||||| ||||| Sbjct 1697962 TCAGTTAGATCTCGTAATAAG-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTCT 1697904 Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209 | | |||||||| |||||||||||||| | |||||||| ||||| |||||||| || Sbjct 1697903 TCTTGCATAAATATTGCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTGC 1697844 Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 77269 |||||| || |||||||||||||| | | |||| |||||| | |||||| | || Sbjct 1697843 AGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCTAATTCCATGTTTAGCAAT 1697784 Query 77270 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTA 77329 ||| ||||| | | | |||||| ||| | ||| | || ||||| ||| | ||| || Sbjct 1697783 TTTTTCTTTCAAAATTGTCCAATTCCATAAATCAGTTGGAGTAACATTCCACATATCATA 1697724 Query 77330 TTGTAGAAT 77338 ||||| ||| Sbjct 1697723 TTGTAAAAT 1697715 Score = 147 bits (162), Expect = 3e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| || |||||||||||| ||||||| |||| | ||||| |||||| ||| Sbjct 1696901 GTATAGAGAGCTTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGA 1696842 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || ||||| |||||| |||| ||||||||||||||| ||||||||||||||| Sbjct 1696841 CACATTAAAGACCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 1696782 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 |||||| |||| |||| | |||||||||||| || ||||| Sbjct 1696781 AGAGCATAGAATAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 140 bits (154), Expect = 5e-28 Identities = 258/376 (69%), Gaps = 8/376 (2%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||||||| ||||| ||| || |||| |||| ||||| ||||| || |||| Sbjct 1697374 TACCTATAGGTCTGTGTCTAAAATTTGATGTTTTCGCTTGTGGAACTGGATAGTAGTTAA 1697315 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || |||||||||| ||||| | | ||| | ||| || | | ||||| ||| Sbjct 1697314 CATCGATAATTTTATCTAGATTACAAGTAACAATTTTTGTAACTTGCAAAAGTTTTTGAA 1697255 Query 77644 AATCAAATCTTCCATCTA------TAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 |||||||| ||| || | | |||||||| || | || || || || | ||||| Sbjct 1697254 AATCAAATGTTCGATTGAGAGGATTTACAAACATATTGACCGCGATTGAAGCCAAATTAC 1697195 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || | |||| | ||| | | |||| || || ||||| | |||||||| || Sbjct 1697194 ACACAGCGATTTCATCTGGACTGGAAAACTGTACGATTTCTGTACACAAATTACTACTTT 1697135 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816 |||| || || | |||||| || || || ||||| |||| || |||||||| ||| Sbjct 1697134 TGATTGTTCCTATATTTTGATGATTTGATTTACGATTGCAATGA-TCTTTATAAAGCATA 1697076 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 77876 | ||||| || ||||||| || | | | ||||| | |||| | ||||||||| Sbjct 1697075 TAAGGAGTTCCTGTTTCAACTTGAGCGACAAGAATAGCTGTCCATAAATCTCTAGCTTGA 1697016 Query 77877 ATCATAGATTTGTATC 77892 ||| | ||| |||| Sbjct 1697015 ATCTGACGTTTATATC 1697000 Score = 129 bits (142), Expect = 8e-25 Identities = 211/302 (70%), Gaps = 9/302 (3%) Strand=Plus/Minus Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || || ||||| ||||||||||| | ||| || | ||||| | |||||||||||| | | Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 ||||| || | |||| |||| |||||| ||||| ||||| | ||| | || |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || || ||||| | ||||||||| | ||| |||||| ||| ||| |||| || Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 1696484 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGA 78304 | || |||| |||||| |||| | || || || || || || ||| Sbjct 1696483 GTACCTTTTGCTCGAATA----CAATGTACATTAAGTCCAATACCACCAGCTGATTTACT 1696428 Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA-TGT 78363 || || || || | ||| |||||||| || || || || || || ||||| ||| ||| Sbjct 1696427 AATAAGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGT 1696368 Query 78364 TA 78365 || Sbjct 1696367 TA 1696366 Score = 102 bits (112), Expect = 1e-16 Identities = 188/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||||||||| || | ||| | |||| ||| | ||| ||||||||||| ||||| Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||| || | | ||||||||||| ||| || || || || ||| || Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCACCATGGATA 1696167 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 | || || || | ||| | |||||| || ||||||||||| || || ||| || Sbjct 1696166 GCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTTT 1696107 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 || || || ||| || | || ||||||||||| || || || ||| ||||| || Sbjct 1696106 AATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 1696047 Query 78618 TAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 ||||| || | ||||||| |||| |||| |||| Sbjct 1696046 TAAATTATTGCGGAATTTAATTTA--TTTGCATTT 1696014 >seq25 Length=3544016 Score = 114 bits (126), Expect = 2e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGT---CTATCTGCAACGAATTCTATA 47993 ||| ||| |||| | | |||||||| ||| ||| || || ||||| ||||| ||| Sbjct 2907275 TTACAAACCTTTTCACAGCCTAATTC---AATAAGTAACCTGTCAGCAACAAATTCGATA 2907331 Query 47994 TATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGA 48053 ||| ||| | || ||||||||||||||| | || ||| |||| || ||||| | | Sbjct 2907332 TATTGACACATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAA 2907391 Query 48054 AACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGT 48113 || |||||||| || |||||||||| || || ||||| || ||| | |||| Sbjct 2907392 AATTCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGT 2907451 Query 48114 GGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACC 48163 | | | ||||| |||||||||||||| ||||||||||| || || Sbjct 2907452 TTTTGTATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCC 2907501 Score = 96.9 bits (106), Expect = 5e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||| |||||| ||| |||||||| ||||| ||| ||||||||||| ||||| ||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATT 47929 ||| || |||| |||||||||||||| ||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694643913490240