Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq64 185 1e-41 seq25 131 2e-25 >seq64 Length=2955609 Score = 185 bits (204), Expect = 1e-41 Identities = 216/289 (75%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 75646 TATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTC-TAAGGA 75704 ||||||| || || || || |||| ||| | | ||| || |||| | ||| ||| | Sbjct 1698002 TATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCTTTCAGTTAGATCTCGTAATAA 1697943 Query 75705 GATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGG 75764 | ||||| || |||||||| ||||||||||||| ||||||| | |||||||| |||| Sbjct 1697942 G-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTCTTCTTGCATAAATATTGCTGG 1697884 Query 75765 TATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAG 75824 |||||||||| | |||||||| ||||| |||||||| ||||| || || || ||||||| Sbjct 1697883 TATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTGCAGTAGATGCTGTTGGCATAG 1697824 Query 75825 GTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCC 75884 |||| | | |||| |||||| | |||||| | ||||| ||||| | | | ||| Sbjct 1697823 GTGCAATTAGTAAAGAATTTCTAATTCCATGTTTAGCAATTTTTTCTTTCAAAATTGTCC 1697764 Query 75885 AATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||| ||| | ||| | ||| ||||| ||| | ||| ||||||| ||| Sbjct 1697763 AATTCCATAAATCAGTTGGAGTAACATTCCACATATCATATTGTAAAAT 1697715 Score = 145 bits (160), Expect = 1e-29 Identities = 124/153 (81%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||||||||| ||||||| |||| | ||||||| |||||| |||||||| || || Sbjct 1696890 TTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGA 1696831 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| |||||| |||| ||| ||||||||||| ||||||||||||||||||||| || Sbjct 1696830 CCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGCATAGAA 1696771 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 || |||| | |||| ||||||| || ||||| Sbjct 1696770 TAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 138 bits (152), Expect = 2e-27 Identities = 210/298 (70%), Gaps = 1/298 (0%) Strand=Plus/Minus Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || ||||| ||||||||||||| || || | ||||| | |||||||||||| | | Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 ||||| || | | || |||| |||||| ||||| ||||| | ||| | || |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || || ||||| | ||||||||| | || |||||| |||| ||| |||| || Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 1696484 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 | || ||| |||||| | | | || || || || || || |||| || Sbjct 1696483 GTACCTTTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTACTAATA 1696424 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA-TGTTA 76960 || ||||| | ||| ||||| ||||| || || || || |||||||| ||| ||||| Sbjct 1696423 AGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTTA 1696366 Score = 125 bits (138), Expect = 1e-23 Identities = 244/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 |||| |||||||| ||||| ||| || ||| |||| ||||| || || || |||| Sbjct 1697374 TACCTATAGGTCTGTGTCTAAAATTTGATGTTTTCGCTTGTGGAACTGGATAGTAGTTAA 1697315 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||| |||||||||| ||||| | ||| | ||| || | | ||||| ||| Sbjct 1697314 CATCGATAATTTTATCTAGATTACAAGTAACAATTTTTGTAACTTGCAAAAGTTTTTGAA 1697255 Query 76239 AATCAAATTTTCCATCTA------TCACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 |||||||| ||| || | | ||||||||||| | || || || || | ||||| Sbjct 1697254 AATCAAATGTTCGATTGAGAGGATTTACAAACATATTGACCGCGATTGAAGCCAAATTAC 1697195 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || | |||| | | ||| | | |||| || || || || | |||||||| | Sbjct 1697194 ACACAGCGATTTCATCTGGACTGGAAAACTGTACGATTTCTGTACACAAATTACTACTTT 1697135 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAGAACA 76411 |||| ||||| | |||||| || || || || | |||| || |||||||| | | Sbjct 1697134 TGATTGTTCCTATATTTTGATGATTTGATTTACGATTGCAATGA-TCTTTATAAAGCATA 1697076 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 76469 | |||||||| ||||||| || | | | ||||| | |||| | ||||||||| Sbjct 1697075 TAAGGAGTTCCTGTTTCAACTTGAGCGACAAGAATAGCTGTCCATAAATCTCTAGCTT 1697018 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || || || | || | |||| ||||| || || || ||||| |||||||| Sbjct 1697610 ATAAGTTTCATATGTTCCTTTCTCTGCAGCAAGTTCACAGCTAGCTTCTAAGGCACCGTA 1697551 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| | |||||| || || | ||||||| | ||| ||||| ||| ||||| ||||| Sbjct 1697550 ATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCCTCACTTTCAAATGGATA 1697491 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | || ||| |||||||| || ||||||| |||||| || Sbjct 1697490 TCGCATTAAAAGAAACGCATCTGCGAGACCCTGAATTCCAATCCC 1697446 Score = 100 bits (110), Expect = 4e-16 Identities = 180/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||||||||| || | ||| | |||| ||| | ||| |||||||||||||| || Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 | ||| || | | ||||||||||| |||||| || ||||| ||| || Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCACCATGGATA 1696167 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 | || || || | ||| | |||||| || |||| ||| ||| || || ||| || Sbjct 1696166 GCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTTT 1696107 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 || || || ||| || | || ||||||||||| || || || ||| ||||| || Sbjct 1696106 AATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 1696047 Query 77213 TAAATAATAACCGAATTTAGTTT 77235 ||||| || | ||||||| ||| Sbjct 1696046 TAAATTATTGCGGAATTTAATTT 1696024 >seq25 Length=3544016 Score = 131 bits (144), Expect = 2e-25 Identities = 163/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 46899 ATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958 ||||||||| ||||| | | |||||||||||| || | ||||| || || || ||||| Sbjct 2908036 ATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAA 2908095 Query 46959 TCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC-AAAT 47017 || || || || | |||||| || || ||||| ||| || ||||||||| ||| | || Sbjct 2908096 GCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTC-GACGAGAT 2908154 Query 47018 TCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATT 47077 ||||||| || ||||||||| ||| ||||| ||||| || || | ||||||| || Sbjct 2908155 TCTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTT 2908214 Query 47078 TTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 | || | | || | | |||||||||| |||||||| Sbjct 2908215 TCTCTTTGTTATTTAAACTATTCCAGTCCAACGTATCTTTT 2908255 Score = 123 bits (136), Expect = 4e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46426 TTATAAAtttttttAAATCCTAATTCTGAAATCAGT---CTATCTGCAACGAATTCTATA 46482 ||| ||| |||| | | |||||||| ||| ||| || || ||||| ||||| ||| Sbjct 2907275 TTACAAACCTTTTCACAGCCTAATTC---AATAAGTAACCTGTCAGCAACAAATTCGATA 2907331 Query 46483 TACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGA 46542 || ||| | || ||||||||||||||| | || || |||| || ||||| | | Sbjct 2907332 TATTGACACATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAA 2907391 Query 46543 AACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGT 46602 || ||||||||||| |||||||||| || || ||||| ||| ||| | |||| Sbjct 2907392 AATTCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGT 2907451 Query 46603 GGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCC 46652 || || | ||||| |||||||||||||| ||||||||||| || || Sbjct 2907452 TTTTGTATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCC 2907501 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||| |||||| ||| || ||||| || || ||| ||||||||||| ||||| ||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||| || |||| |||||||||||||||||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712908859125120