Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq25 113 5e-20 >seq25 Length=3544016 Score = 113 bits (124), Expect = 5e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 ||||| |||||||||||||||| |||| ||||||||| || || | |||||| || || Sbjct 2908027 ATCTGCGATATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGC 2908086 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 || ||||| ||||| || || | ||||| | | ||| || || | | ||||| || Sbjct 2908087 GATTTGAAAGCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTC 2908146 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | | ||| || || ||||| |||||| ||| |||||||| || | || || ||| Sbjct 2908147 GACGAGATTCTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATAT 2908206 Query 23952 AAAATGT 23958 ||||||| Sbjct 2908207 AAAATGT 2908213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 23340 CCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTT 23399 ||| || || |||||||| |||||||||||||| | | | | || || ||||| | || Sbjct 2907310 CCTGTCAGCAACAAATTCGATATATTGACACATAAGTTTACAATTCATTCCTATCATTTC 2907369 Query 23400 TACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTG 23459 || || | ||||| ||| ||| || |||||| ||||||||||||| || ||| Sbjct 2907370 AACAGGTAAGGCATCCGTTAAAAATTCTTGTTCAATTTTGACAGCATCTTTAA-TAATTG 2907428 Query 23460 AACAATAACTTCTTCACTAGGTGGATATTTTAAA---TACTTAAACAATAAACATGCAAA 23516 | | ||| ||| || ||| | || || | | || |||| ||||||||| || Sbjct 2907429 A--TGTGACTCGTTCGGAAGATGGTTTTTGTATAATGTGTTTGAACATTAAACATGCGAA 2907486 Query 23517 ATCACAATGTAGGCC 23531 |||||||||||| || Sbjct 2907487 ATCACAATGTAGTCC 2907501 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| || ||| ||| |||||||| || || | |||||||||||||||| ||||| || Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATT 23297 || || |||| |||||||||||||| ||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521469317692400