Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq65 120 2e-22 seq190 104 2e-17 >seq65 Length=2871674 Score = 120 bits (132), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| | | || || || || || |||||||||||||| || Sbjct 611553 TTGCATACCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGGATGTTATA 611612 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| ||| ||| |||| |||| || || ||||| |||||||| | ||||||||| Sbjct 611613 ATCGGAAAGTGTGCGTCCGTCTTCCAATTGTTTGCCGGCGAAGATCAATCTCTGCTGATC 611672 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||| || ||| ||||| || | || ||| | || ||||| | | Sbjct 611673 TGGCGGAATACCTTCTTTATCCTGAATCTT-GGCCTTAACATTCTCAATTGTGTCAGAAG 611731 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 611732 CCTCAACTTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611786 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| | || || || ||||| || |||||||||||||| || Sbjct 611097 TTGCATACCTCCTCTCAAACGCAGAACAAGATGAAGGGTTGATTCCTTTTGGATGTTATA 611156 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| ||| | || || || || || || ||||| ||||| | |||||||| Sbjct 611157 ATCCGAAAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGCTGATC 611216 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||| || ||| ||||| || | || ||| | || ||||| | | Sbjct 611217 TGGCGGAATACCTTCTTTATCCTGAATCTT-GGCCTTAACATTCTCAATTGTGTCAGAAG 611275 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 611276 CCTCAACTTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611330 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| | || || || ||||| || |||||||||||||| || Sbjct 611325 TTGCATACCTCCTCTCAAACGCAGAACAAGATGAAGGGTTGATTCCTTTTGGATGTTATA 611384 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| ||| | || || || || || || ||||| ||||| | |||||||| Sbjct 611385 ATCCGAAAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGCTGATC 611444 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||| || ||| ||||| || | || ||| | || ||||| | | Sbjct 611445 TGGCGGAATACCTTCTTTATCCTGAATCTT-GGCCTTAACATTCTCAATTGTGTCAGAAG 611503 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 611504 CCTCAACTTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611558 Score = 105 bits (116), Expect = 5e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| | | || || ||||| || |||||||||||| || || Sbjct 610869 TTGCATTCCTCCTCTCAAACGAAGAACAAGATGAAGGGTTGACTCCTTTTGGATATTATA 610928 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | | || || || || | || || ||||| |||||||| | ||||||||| Sbjct 610929 ATCAGACAATGTACGATCATCTTCTAATTGTTTGCCGGCGAAGATCAACCTCTGCTGATC 610988 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | ||||| || || ||||| || | || ||| | || ||||| | | Sbjct 610989 TGGTGGAATGCCTTCTTTATCTTGAATCTT-GGCCTTAACATTCTCAATTGTGTCAGAAG 611047 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 611048 CCTCAACCTCAAGGGTAATGGTTTTACCTGTGAGGGTCTTGACGAAAATTTGCAT 611102 Score = 105 bits (116), Expect = 5e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| | | || || || || || |||||||| || || || Sbjct 611781 TTGCATACCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATA 611840 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| ||| ||| | || |||| ||||| |||||||||||||| | |||||||| Sbjct 611841 ATCGGAAAGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATC 611900 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 || || | || ||||| ||| | | || ||| || | || | ||||| || | | Sbjct 611901 TGGTGGAATTCCCTCCTTGTCC-TGAATTTTTGCTTTGACATTTTCAATGGTATCAGACG 611959 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| ||||| |||||||| || || || || || || |||||||| Sbjct 611960 CTTCAACCTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 >seq190 Length=691288 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||||| || || | || || || |||||||| ||||||||||| Sbjct 256433 CCACCTCGGAGTCTTAAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAAC 256374 Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| | | || || | ||||||||| |||||||||||||| |||||||| | || Sbjct 256373 AAAGTT--CTTCCATCTTCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAG 256316 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | ||||| || || || || |||| || |||| ||||| | | ||| | Sbjct 256315 GAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCTA 256256 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | |||| || || || ||||| ||||| ||||| || |||||||||||| Sbjct 256255 CTTCCAAAGTGATGGTTTTTCCTGTGAGTGTCTTGACAAAGATTTGCATG 256206 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||||||||||| | || || || |||||||| ||||| ||||| Sbjct 260754 TTCCTCCACGGAGTCTCAACACTAAATGCAGAGTAGATTCCTTTTGAATGTTATAATCCA 260695 Query 44169 CGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | | || || | |||||||| |||||||||||||| ||||| || | Sbjct 260694 ACAAAGTT--CTCCCATCTTCTAATTGCTTCCCAGCAAAGATCAAACGTTGCTGGTCAGG 260637 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| || || ||| ||| | || | || || || | | ||| Sbjct 260636 AGGAATTCCTTCCTTGTCTTGAATTTTCGCCTTAACATTTTCGATTGTATCAGAAGCTTC 260577 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||| ||||| || || || ||||| || || ||||||||||||||| Sbjct 260576 TACTTCCAAGGTAATGGTTTTCCCTGTGAGTGTTTTGACGAAGATTTGCATG 260525 Score = 96.9 bits (106), Expect = 2e-15 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| ||||||||||||| || || || |||||| || |||||||| Sbjct 260303 TTGCATGCCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTA 260244 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | | | || || | || || || || ||||| ||||| ||||| Sbjct 260243 GTCCGAAAGAGTT--CTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGG 260186 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | ||| | ||||| || || || ||| || | || ||| |||| ||||| | Sbjct 260185 TCAGGAGGAATTCCTTCTTTGTCTTGAATTTTC-GCCTTAACATTCTCTATTGTGTCTGA 260127 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||| | ||||| || ||||| ||||| || || || ||||| |||||| Sbjct 260126 AGCCTCTACCTCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATG 260069 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| ||| |||| |||||| || || || || || |||||||| Sbjct 255069 CATGCCGCCACGAAGTCGCAATACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATC 255010 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || || | || || || ||||| |||||||||||||| |||| Sbjct 255009 TGAGAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGCTGCTGGTCTGG 254950 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | || || || || ||||| ||| |||| || |||| ||||| | | || Sbjct 254949 AGGAATTCCCTCTTTGTCTTGGATCTT-TGCTTTCACATTTTCTATTGTGTCAGAAGCTT 254891 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | || || | ||||| || ||||| || | |||||| || ||||| ||||| || Sbjct 254890 CAACTTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCATAAT 254836 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| |||||||| || || ||||| || || || || ||||| || Sbjct 256212 TTGCATGCCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATA 256153 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||| | ||||| | | || || | ||| || || || ||||||||||||||||| Sbjct 256152 ATCTGACAGAGTT--CTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGG 256095 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 |||| ||| | |||| |||| | | | || |||| | ||| |||| ||||| | Sbjct 256094 TCTGGAGGAATTCCTT-CTTTGTCTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGA 256036 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||| || || | ||| || || ||||| || | || || || |||||||||||| Sbjct 256035 AGCTTCTACTTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCATG 255978 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| |||| ||| |||| || || || ||||||||||| ||||| Sbjct 260531 TTGCATGCCTCCTCGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTGTA 260472 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||| | ||||| | | || || | ||||| || ||||| |||||||| || || Sbjct 260471 ATCCGAAAGAGTT--CTTCCATCTTCTAATTGCTTGCCAGCAAAAATCAAACGTTGTTGG 260414 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | ||| | ||||| || || || || |||| | ||| |||| || || | Sbjct 260413 TCAGGAGGAATTCCTTCTTTATCTTGGAT-TTTAGCTTTCACATTCTCTATTGTATCTGA 260355 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||| ||||| | ||||| || ||||| ||||| || || || || ||||||||| Sbjct 260354 GGCTTCTACCTCAAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAAATTTGCATG 260297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| ||| |||| || || || ||||||||||| || ||||| Sbjct 260072 CATGCCGCCACGAAGTCGCAATACCAAATGGAGTGTAGATTCCTTTTGGATATTATAATC 260013 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | | ||| | | || || | ||| || || ||||||||||| || |||||||| Sbjct 260012 TGACAAAGTT--CTTCCATCCTCTAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGATCA 259955 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| ||| || || ||| | || | || ||||| | | | Sbjct 259954 GGTGGAATTCCTTCCTTGTCCTGAATTTTTGCCTTAACATTTTCGATTGTGTCAGAAGCT 259895 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | ||||| || ||||| || | |||||| || ||||| |||||| Sbjct 259894 TCAACTTCAAGAGTAATAGTTTTTCCTGTTAAGGTCTTAACAAAGATCTGCATG 259841 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| ||| || || || || || || || || ||||| || || Sbjct 255753 CATACCTCCTCGGAGTCGCAATACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAGTC 255694 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | | || || | ||| || || |||||||||||||||||||| ||| Sbjct 255693 TGACAGAGTT--CTCCCATCTTCTAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCT 255636 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | || || || || ||||| || || | |||| |||| ||| | | | Sbjct 255635 GGAGGAATTCCCTCTTTGTCTTGGATCTT-TGTTTTCACGTTCTCTATTGTGCCAGAAGC 255577 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || |||| || || || ||||| || | || || || ||||| |||||| Sbjct 255576 TTCTACTTCCAAGGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATCTGCATG 255522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977825760322