Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq65 127 2e-24 >seq65 Length=2871674 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || | |||||||| || ||||| | || |||||| ||||||||||| || || Sbjct 612243 GCCTCCTCTTAGACGTAGTACAAGATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGA 612302 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || || ||||| || || ||||||| | ||||||||| | || Sbjct 612303 AAGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGG 612362 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCT--CGACTCC 41812 || | ||||||| | ||| ||||||||| ||| || | ||| || | || Sbjct 612363 AATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTTTTCA-ATTGTATCTGATGCTTCA 612420 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| |||||||||||||| |||| ||||| ||||| ||||||||| Sbjct 612421 ACCTCCAGGGTTATCGTTTTACCTGTCAATGTCTTGACGAAGATCTGCATG 612471 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || || || ||||||||||| || || Sbjct 610648 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATGTTATAATCAGAA 610707 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || | || ||||| ||||| |||| | ||| ||||| | |||| Sbjct 610708 AGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGA 610767 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| |||| |||| || | | ||||| | ||| || Sbjct 610768 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAAC 610826 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 610827 TTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAACGAAAATTTGCAT 610874 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||||| || ||||| || Sbjct 612016 CCACCACGAAGACGAAGTACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAGTCTGAA 612075 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | |||||||||||||| |||| | || || || | ||| Sbjct 612076 AGTGTACGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 612135 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || ||| | || ||||||||| |||| | | || || | ||| || Sbjct 612136 ATGC-CTTCTTTATCTTGGATTTTTGCTTTAACGTTTTCAATCGTATCTGAGGCCTCAAC 612194 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || |||||||| || || ||||| |||||||| |||||| Sbjct 612195 TTCGAGTGTAATTGTTTTACCAGTGAGAGTCTTGACGAAAATTTGCATG 612243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| || ||||| ||||| ||||| ||||| || ||||| | || || Sbjct 611806 ACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGAAAGTGTGCGTCCATCTTCC 611865 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||||||||||| || |||| | || || || | |||| | |||||||||| || Sbjct 611866 AATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTCC-TG 611924 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | ||||||||| || | | || || || || ||||||| || || || || Sbjct 611925 AATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAACCTCCAAGGTAATAGTCTT 611984 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| Sbjct 611985 TCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| || ||||| || |||||||| ||||| || ||||| |||| || Sbjct 611578 ACAAGATGCAGAGTTGATTCCTTTTGGATGTTATAATCGGAAAGTGTGCGTCCGTCTTCC 611637 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | || ||||||||||| |||| | ||| || || | |||| | || || ||| || Sbjct 611638 AATTGTTTGCCGGCGAAGATCAATCTCTGCTGATCTGGCGGAATACCTTCTTTATCC-TG 611696 Query 41774 ATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | ||| | | ||||| | ||| || || | || || ||||| Sbjct 611697 AATCTTGGCCTTAACATTCTCAATTGTGTCAGAAGCCTCAACTTCAAGGGTAATGGTTTT 611756 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || ||||| |||||||| ||||| Sbjct 611757 ACCTGTGAGGGTCTTGACGAAAATTTGCAT 611786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462287437959200