Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2852 93.3 9e-14 seq832 93.3 9e-14 seq3323 89.7 1e-12 seq3169 89.7 1e-12 seq1943 89.7 1e-12 seq1574 89.7 1e-12 seq1126 89.7 1e-12 seq805 89.7 1e-12 >seq2852 Length=340668 Score = 93.3 bits (102), Expect = 9e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 165697 ACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGT 165756 ||||| ||| |||||| ||||||||||||||||||| ||||| ||||||| ||| Sbjct 189905 ACTTATAACA--TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGT 189962 Query 165757 CGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||| ||||| Sbjct 189963 CGTGGGTTCGAGCCCCACGTTGGGC 189987 >seq832 Length=456244 Score = 93.3 bits (102), Expect = 9e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 165698 CTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTC 165757 |||| | ||| ||||| ||||||||||||||||||| ||||| ||||||| |||| Sbjct 100094 CTTACAGCGCAAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTC 100153 Query 165758 GTGGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||||| ||||| Sbjct 100154 GTGGGTTCGAGCCCCACGTTGGGC 100177 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 132703 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 132762 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 132763 CCCACGTTGGGC 132774 >seq3323 Length=58566 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 47282 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 47223 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 47222 CCCACGTTGGGC 47211 >seq3169 Length=150274 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 123312 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 123371 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 123372 CCCACGTTGGGC 123383 >seq1943 Length=16654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 5187 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5246 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5247 CCCACGTTGGGC 5258 >seq1574 Length=127506 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 58282 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 58223 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 58222 CCCACGTTGGGC 58211 >seq1126 Length=83761 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 80664 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 80605 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 80604 CCCACGTTGGGC 80593 >seq805 Length=382078 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 259090 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 259149 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 259150 CCCACGTTGGGC 259161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057712035610430