Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq865 93.3 4e-14 seq1957 91.5 2e-13 >seq865 Length=175398 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATA-C 119918 || || || || || || || ||||||| | ||| || | ||| |||||||| ||| | Sbjct 29358 CCAACATAGCCATTAGGGTCTCTTCCATCGACACTA-TAATGATCATTTAAGTATATAGC 29416 Query 119919 AGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 | | ||| ||| |||||| | | ||||||| || ||||| ||| |||||||| Sbjct 29417 ATATT-TTAGTGCATCTTCAGGGGACGGTGTCCATTCAAGAATTTTCTTACACCAGTACA 29475 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 | || ||| ||||||||||||| ||||| | |||| ||| | ||| || || ||||||| Sbjct 29476 TCCGCAAGAATCCATGCATTTTCCCTTCCTGTACCAATTGTAATTGAGCTGCATTCCATA 29535 Query 120039 AG 120040 || Sbjct 29536 AG 29537 >seq1957 Length=467265 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||| || ||||||| || ||||| || |||||||| || || || || | ||||| Sbjct 419049 GTACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAAGCCATAGAAACACCTAGCTTC 418990 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | | || ||||| | || |||||| | || || || || || ||||| || Sbjct 418989 TGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGGTTCTCATTGACTATGCCATCTGA 418930 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCG 17419 || || || ||||| |||| |||||||||||||| ||||||| Sbjct 418929 TGCAGCAAAGAACGCTAATACATGCTTAATGAAATGTTTTTCG 418887 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACG 16854 |||||| |||||||| || || || | |||| | || |||||||| || | ||| | Sbjct 421501 TCTATCAGCTACAAACTCGATGTAGTCAGACATGAGCTCACAGTTCATGCCAAGAAGCCT 421442 Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-C 16913 || |||||||| || ||||| || || || ||||| || || | ||| || || | Sbjct 421441 GACAGGAAGAGCATCGGTCAAGAACTCCTGTTCAATAACTACTGCGTTCTTTATGATCTC 421382 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAAT 16973 ||| | | | ||| | ||||| | ||| ||||| ||||||||||||||||| || | Sbjct 421381 TAGTA-CACTTTCGTTTGACGGCTTCTGTACTAGATGCTTAAACATCAGACATGCAAAGT 421323 Query 16974 C 16974 | Sbjct 421322 C 421322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517492156947480