Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1988 102 6e-17 >seq1988 Length=441106 Score = 102 bits (112), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 102089 CCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCC 102148 ||||| ||||| ||| |||||| | ||||| | ||| | ||| || ||||| |||||| Sbjct 379235 CCTTCCTCTCTATCAGTAAAACCTAAATTATCAAGAAACGCTCTGGAACCATTTGCATCC 379176 Query 102149 CAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCAC 102208 ||||| || || || | |||| |||| ||||| || ||| || | |||| Sbjct 379175 CAAATATGTACTCCTTTATTAGCTAGCACTTTACTGTCTGTGCTTCCAGATATCAGCCAC 379116 Query 102209 AACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAAT--- 102265 | |||||||||| |||||| || ||||||||| |||||||| | | ||| ||| Sbjct 379115 AGTAGTTCTTCAATAACACCCCTTACAAATACTCTTTTAGTAGTAAGTAATGGTAATACG 379056 Query 102266 TCATTTTCTAAA 102277 | |||||||||| Sbjct 379055 TTATTTTCTAAA 379044 Score = 98.7 bits (108), Expect = 7e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101749 ATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCAC 101808 ||| || ||||| ||||||||| || || | || ||| || ||||||||||| || || Sbjct 380039 ATTGGTTACATGTGCAATCATGTGTGTCAATAAAGCATAACTTGCAATGTTAAAGGGAAC 379980 Query 101809 TCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGAC 101868 || || ||||||||||| |||||| |||| | | ||||| | ||||| | || Sbjct 379979 ACCCAAGCCCATATCAGCACTTCTTTGGTACAATAGGCAGGACAATTTTCCCTTGGCCAC 379920 Query 101869 ATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATT 101928 || ||| || ||| ||||| || || | ||||||| | || ||| | | Sbjct 379919 ATGAAACTGTGCTAAGCAGTGACATGGTGGAAGTGCCATTTTGCCTAGATCAGAAGGAAT 379860 Query 101929 CCAAGCACACATTAACATCCTTCTATC 101955 ||| | |||||||||||||||||||| Sbjct 379859 CCAGGAGCACATTAACATCCTTCTATC 379833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361214828890511