Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq538 518 4e-142 seq1957 104 3e-17 >seq538 Length=46986 Score = 518 bits (574), Expect = 4e-142 Identities = 1197/1792 (67%), Gaps = 30/1792 (2%) Strand=Plus/Plus Query 52786 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 52845 ||| | |||| ||| || | || |||||||| | | | || ||||| ||||||| Sbjct 41428 TTTAACTTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAA 41487 Query 52846 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT 52905 |||||||||||| ||||| | || | |||| | || ||||| ||| ||||| ||| Sbjct 41488 ATAGTACATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTT 41547 Query 52906 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 52965 |||| | || || |||| ||| ||||| | || ||||| ||||| || || ||||| Sbjct 41548 TCCATAATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCC 41607 Query 52966 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 53024 || ||||||||||||| ||| | || || || ||||||||||| || || || || Sbjct 41608 TCTATCTGCAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAA 41667 Query 53025 CTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATAGATCCACCATCTACCATAA 53081 || ||| || | || ||||| ||| |||| || ||||||||| | || | Sbjct 41668 GTCCCTT-ATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTA 41726 Query 53082 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 53141 || ||| || || || |||| |||||| | | ||||||| || | | |||||| Sbjct 41727 TCAAATTTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGAT 41786 Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 53201 | ||||| |||||||| || ||||| ||||| | || |||||| || ||| | | Sbjct 41787 GGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATG 41846 Query 53202 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 |||| | ||| ||||||||||| | || || || || || ||||| ||||| || || | Sbjct 41847 GTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTA 41906 Query 53262 CCAATAAACTATTTCTAAGACCGTATGTTCTG-ATTTTATCTTTTAGAGGTTCCCAATTC 53320 ||| | ||| | |||||| ||| | || | ||| ||||||| | ||||| | Sbjct 41907 ACAAAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTCTTTTAAGGCAGTCCAATCC 41964 Query 53321 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTA 53379 || ||||| | || ||||| ||| || | ||| || | | Sbjct 41965 CACAGATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGA 42024 Query 53380 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 53439 | ||| |||| || ||| ||||||||||| || | ||||||||| || ||||| Sbjct 42025 C-TTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAA 42083 Query 53440 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 53499 || || || || || ||||| || || | | ||| || |||||| || || Sbjct 42084 AGCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTC 42143 Query 53500 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 | | ||| | | | | | ||| || ||||||||||| |||||||| || || ||||| Sbjct 42144 ATAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGG 42203 Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 |||||| || |||| || | | |||||||| | ||||| | |||| ||| ||||| Sbjct 42204 CCTATGTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAAT 42263 Query 53620 TTTATTGAGGTTTCTGACAATTACTTTGA-CCACATCCTTCAGTTTGAGAAAATCAAATT 53678 ||||| | ||| || | | ||| | || | || | ||| |||||| ||| Sbjct 42264 CTTATTTAAATTT-TGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAG 42322 Query 53679 GTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT 53738 | || | |||||||| || | || || || || | ||| || || || || |||| Sbjct 42323 TTTTATTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCAT 42382 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 || | ||| | | || || |||||||| || || || || || || || | || Sbjct 42383 CAGGTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGAT 42442 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 ||| ||||||||| ||| |||| || | ||| ||||| | || |||| || || |||| Sbjct 42443 TTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTT 42502 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGA------CACGAGCCTTTATTATAGATT 53912 ||| || | |||||| || |||||||| | | ||||| | | | ||| | Sbjct 42503 CAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACA---- 42558 Query 53913 TGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACAT 53972 || | |||||| ||| || | ||| || |||||| || || |||||| || Sbjct 42559 --TAGCGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAAT 42616 Query 53973 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 54032 |||||||||| || | | |||||||| | ||| | | | | | | || | Sbjct 42617 CAGCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCC 42676 Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCC 54091 |||||||||| | ||| || ||||| | ||| ||| |||| ||||| | || ||| Sbjct 42677 GTTTCATAAACAAATCTGGTATCCATAAAGC-ATAGAATAATTCTCTTGCTCGTACTTCT 42735 Query 54092 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151 || || || ||||||||||| | ||| | || | | | ||| | ||||| |||||| Sbjct 42736 TCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCC 42795 Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211 || || | | | ||||||| |||||||| || || ||||| | ||||| || ||| Sbjct 42796 AAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTG 42855 Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271 |||||||| ||||| ||||| |||| || ||||||||| ||||| || || | ||| Sbjct 42856 TTATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATA 42915 Query 54272 TAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 || |||| | || | || | | | | ||| | ||| || || || || || | Sbjct 42916 TAAGTTCCTTTAGCTCTTATGCAATGC-ACATGA-ACACCGATACCTCCAGCTGACTTGG 42973 Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389 | |||||||| ||| |||||| |||||||| || || || ||||| ||||| |||| Sbjct 42974 AAATTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAG 43033 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 | || ||||| ||||| ||| | | ||| | ||| ||| | || || Sbjct 43034 CTACAAGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGC 43093 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 || || ||||| |||||||||| | | |||||| || | ||||||| ||||||| Sbjct 43094 TTGCATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATAT 43153 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 | || || || || || |||||||| | ||| ||||| |||| ||| Sbjct 43154 CTTCCCCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTC 43205 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 54779 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 ||||| |||||||| |||| |||||||| |||| |||||| ||||||||| |||| || Sbjct 44462 TTTTTGGTTTCTTTATGTAAATTTGATATTGCTAATCTAGCAGCTAGAATGCCATAGTCT 44521 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | || || || ||||| |||| |||| || | |||| ||| || ||| Sbjct 44522 GGATGATCAGTTGTCATTGTAGCTGCAGTTTCAGCTGCCAAGTTATCCAGTTCGACAGTT 44581 Query 54899 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 54939 ||||||||| || || || ||||| |||| || ||| Sbjct 44582 GTTACTCCAGAGTAAATGCCACTTATAACTTTCAAAGTTAT 44622 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||||||||||||||||| ||| || ||| |||| | ||| || || |||||||| ||||| Sbjct 43749 CTTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTA 43808 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAAC 54684 | ||| || || || |||| ||| | |||| |||| | || |||| ||| |||| Sbjct 43809 TTTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAAC 43865 >seq1957 Length=467265 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | ||| ||||| || || | ||| || ||||| ||||| || ||||| |||| Sbjct 419604 AAAGTCAATCCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCA 419545 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || ||||| || ||||| ||||| ||||| || | || | ||| || || | || | Sbjct 419544 GAGAAGAATATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAA--GTTGCAG 419487 Query 24306 TCATGTATCCACTT--TTG---AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 || || | || | ||| |||||| || |||||||| |||||||| || | ||||| Sbjct 419486 TCTTGCTTGCAATCCATTGCATAGCCCAGTCAGCCTTCTTCTTTACACAGGGTAATGTCT 419427 Query 24361 CTATAGCATTAAAGAGATAGT 24381 | ||||||||||| | | ||| Sbjct 419426 CAATAGCATTAAACAAAAAGT 419406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593660290823280