Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq566 224 8e-54 >seq566 Length=99533 Score = 224 bits (248), Expect = 8e-54 Identities = 647/977 (66%), Gaps = 45/977 (5%) Strand=Plus/Minus Query 105529 TAATCTACAACACCGTCCTCCCACGTGCCC--GAC----CCCGGCCCGTTGCCAGTGCCG 105582 ||||| || |||||||| | ||| || ||| ||| || | ||||||||||| | Sbjct 71233 TAATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCAGTGAAG 71174 Query 105583 GAAAAATAGTTGTCATTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCCGTACATGGCG 105642 | | | |||||| | |||| | | ||||| |||||||| || |||||||| || Sbjct 71173 GGA---TTGTTGTCCT-CGTACCCGTGG--ACGCCAGTCCAGCCACGTCCGTACATTGCC 71120 Query 105643 ACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTTCAG-TAAC--GCATCG-ACAGC 105698 || || || || || || || || | || ||||| || |||| | || ||| | Sbjct 71119 ACTCCGACGATGATCTTCTTCGGGTTCACACCTTG----AGCTAACAAGTATTTTACACC 71064 Query 105699 GTAGTGTGTAGTGTATAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGTTTGGTA 105758 | | ||||| || |||| | ||||| ||| ||||| | | ||| |||| Sbjct 71063 AAAATCGGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTG 71004 Query 105759 GCCCAAATCCGTGTTTGACCAAGCCCCTTTAAAATCGTAACTCATGAGAAATATTTTGCC 105818 |||| | ||| |||||||| || || || || |||||||| || || || | | | Sbjct 71003 CCCCAGAGTGTCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTC 70944 Query 105819 TAATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAACCCGCGCTTAT 105878 | | ||||| |||| | ||||| || || || ||||| |||| ||||| || Sbjct 70943 CATGTAGTTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGAT 70884 Query 105879 AGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGCGCTTCGA--GGTCGTCTAGCATTGCG 105936 ||| ||| |||||||| ||| || ||| | | | || | ||||| |||||| | Sbjct 70883 AGCTGATGTCAATTCGTATTTCCTACCAGTT-GAG-TGAGAAAGTTCGTCAAGCATTTCA 70826 Query 105937 CGCAGCTCCTCCAACAACAAAATGTATGTTTTGGCGTCACCGTCCGCATCGC---CCAAC 105993 || || |||| || | | ||| | |||||||| | || | || Sbjct 70825 CGGAGTTCCTTCATGAGGTTGACGTAAA------CATCACCGTCTTCTGGGCTTCCAAAG 70772 Query 105994 GACGGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAAT 106053 | |||||||| ||||| || || || ||||||||||| ||||| ||||| || || ||| Sbjct 70771 GTAGGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAAT 70712 Query 106054 TTCCACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTT-TCAACATC 106112 ||||| ||| || || || || || || || || || |||| || || | Sbjct 70711 TTCCAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTC----TT 70656 Query 106113 GT--GCATAAAATAA-AATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTT 106169 || | | |||| || || || || | | ||||| ||||| || ||||||||||| || Sbjct 70655 GTCAGTAAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTT 70596 Query 106170 TAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTC 106229 | | || | ||| ||| | ||||| || || || |||||||| || || || Sbjct 70595 CAGGTCAGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTC 70536 Query 106230 GTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGC 106289 ||||||| || | |||||| || ||||| |||| ||| ||||| ||||||||||| | Sbjct 70535 ATTCCAAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGA 70476 Query 106290 AACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCC--GGGT 106347 ||||| || || ||||| || |||| || | ||| | | || || ||||| | | Sbjct 70475 TACTTTAAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGAT 70416 Query 106348 ATCGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAAC 106407 || ||| | |||||| || ||||| || || || || || || |||||||||| Sbjct 70415 TTCCTTT--AAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGA 70358 Query 106408 AAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCC 106467 | ||| | || ||| || | || || || ||||| || || | | ||| || ||| Sbjct 70357 AGGTGAGTTAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCC 70298 Query 106468 CACTCAACAAAGTACGC 106484 || || ||||| || || Sbjct 70297 CATTCCACAAAATAAGC 70281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428292874729955