Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq566 163 2e-35 seq5066 86.0 5e-12 seq1218 84.2 2e-11 >seq566 Length=99533 Score = 163 bits (180), Expect = 2e-35 Identities = 334/492 (68%), Gaps = 6/492 (1%) Strand=Plus/Minus Query 102548 GGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTC 102607 ||||| ||||| || || || || ||||||||||| ||||| || || |||||||| ||| Sbjct 70768 GGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTC 70709 Query 102608 CACACCTGCAAAAACTCTTTAACGGATTCGACAAACACGCGC-CGCTTGTCCGCGTCGTG 102666 || || | |||||||| || || || || || || | | |||| | ||| Sbjct 70708 CAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAAG-CGAGTTCTCTTGGTCTTGTCAGT 70650 Query 102667 CATGAAATAGAACGGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATG 102726 | || ||||||| || | || ||||| || ||||| || || || || |||| | Sbjct 70649 AAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTC 70590 Query 102727 CGGGTTTGCCAGCTTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCA 102786 || | || | || | ||||| || || |||||||||||||| || || ||||| Sbjct 70589 AGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCA 70530 Query 102787 TGCGGATACGCCCTTTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTT 102846 | |||| || || || || || |||| ||| ||||| || ||||| |||| || || Sbjct 70529 AGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTT 70470 Query 102847 AAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTT 102906 |||||| |||| || |||| || || || || |||| ||||| || || ||| Sbjct 70469 AAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTT 70410 Query 102907 GAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGA 102966 | |||||| | || || || || ||||| || || || || ||||| || || | Sbjct 70409 TAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGT 70350 Query 102967 CAGGTTGGGCAGCGGCACTTTGTCCACCGGAAA--GCCGCGGCCGTACACGCCCCACTCT 103024 || ||||| | || || || || || || || ||| ||| |||||||| || Sbjct 70349 TAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGG--GTAAACGCCCCATTCC 70292 Query 103025 ACGAAATACGCG 103036 || ||||| ||| Sbjct 70291 ACAAAATAAGCG 70280 >seq5066 Length=19128 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || |||| ||| |||| ||| || || || || |||||||||||||| || | Sbjct 18851 TTCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGG 18792 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | |||| | | || || ||||| || || ||| |||| | | ||||| || || Sbjct 18791 ATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGG 18732 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||| ||||| ||||| ||| || | ||| ||||| || || Sbjct 18731 GAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAA 18672 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 ||| | ||||| ||||| || || | || || || || || ||||| ||||| Sbjct 18671 CTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTTGAA 18617 >seq1218 Length=74600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 38725 GTGCGGC-GGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGC 38783 |||||| |||||||| ||||||||| || | ||||||| | | ||||||| |||| Sbjct 37930 GTGCGGGTGGCGTGGGTCTGAACCTGGTGGGAGCCAACCACCTGCTGCTGCTGGACCCGC 37871 Query 38784 ACTGGAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAA 38843 ||||||||||||| | |||| |||||| || ||||| || ||| | || |||| | Sbjct 37870 ACTGGAACCCGCAGCTGGAGCAGCAGGCACAGGACCGTATATTCCGTGTCGGGCAGACCA 37811 Query 38844 AGC 38846 ||| Sbjct 37810 AGC 37808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422216686547876