Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq566 163 2e-35
seq5066 86.0 5e-12
seq1218 84.2 2e-11
>seq566
Length=99533
Score = 163 bits (180), Expect = 2e-35
Identities = 334/492 (68%), Gaps = 6/492 (1%)
Strand=Plus/Minus
Query 102548 GGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTC 102607
||||| ||||| || || || || ||||||||||| ||||| || || |||||||| |||
Sbjct 70768 GGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTC 70709
Query 102608 CACACCTGCAAAAACTCTTTAACGGATTCGACAAACACGCGC-CGCTTGTCCGCGTCGTG 102666
|| || | |||||||| || || || || || || | | |||| | |||
Sbjct 70708 CAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAAG-CGAGTTCTCTTGGTCTTGTCAGT 70650
Query 102667 CATGAAATAGAACGGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATG 102726
| || ||||||| || | || ||||| || ||||| || || || || |||| |
Sbjct 70649 AAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTC 70590
Query 102727 CGGGTTTGCCAGCTTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCA 102786
|| | || | || | ||||| || || |||||||||||||| || || |||||
Sbjct 70589 AGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCA 70530
Query 102787 TGCGGATACGCCCTTTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTT 102846
| |||| || || || || || |||| ||| ||||| || ||||| |||| || ||
Sbjct 70529 AGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTT 70470
Query 102847 AAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTT 102906
|||||| |||| || |||| || || || || |||| ||||| || || |||
Sbjct 70469 AAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTT 70410
Query 102907 GAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGA 102966
| |||||| | || || || || ||||| || || || || ||||| || || |
Sbjct 70409 TAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGT 70350
Query 102967 CAGGTTGGGCAGCGGCACTTTGTCCACCGGAAA--GCCGCGGCCGTACACGCCCCACTCT 103024
|| ||||| | || || || || || || || ||| ||| |||||||| ||
Sbjct 70349 TAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGG--GTAAACGCCCCATTCC 70292
Query 103025 ACGAAATACGCG 103036
|| ||||| |||
Sbjct 70291 ACAAAATAAGCG 70280
>seq5066
Length=19128
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || || |||| ||| |||| ||| || || || || |||||||||||||| || |
Sbjct 18851 TTCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGG 18792
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
| |||| | | || || ||||| || || ||| |||| | | ||||| || ||
Sbjct 18791 ATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGG 18732
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | |||||| ||||| ||||| ||| || | ||| ||||| || ||
Sbjct 18731 GAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAA 18672
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181
||| | ||||| ||||| || || | || || || || || ||||| |||||
Sbjct 18671 CTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTTGAA 18617
>seq1218
Length=74600
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/123 (76%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 38725 GTGCGGC-GGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGC 38783
|||||| |||||||| ||||||||| || | ||||||| | | ||||||| ||||
Sbjct 37930 GTGCGGGTGGCGTGGGTCTGAACCTGGTGGGAGCCAACCACCTGCTGCTGCTGGACCCGC 37871
Query 38784 ACTGGAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAA 38843
||||||||||||| | |||| |||||| || ||||| || ||| | || |||| |
Sbjct 37870 ACTGGAACCCGCAGCTGGAGCAGCAGGCACAGGACCGTATATTCCGTGTCGGGCAGACCA 37811
Query 38844 AGC 38846
|||
Sbjct 37810 AGC 37808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422216686547876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |