Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq566 250 2e-61 seq5066 89.7 4e-13 >seq566 Length=99533 Score = 250 bits (276), Expect = 2e-61 Identities = 638/964 (66%), Gaps = 19/964 (2%) Strand=Plus/Minus Query 97296 TAATCTACAACACCGTCCTCCCACGTGCCCGACACCGGCCC------GTTGCCAGTGCCG 97349 ||||| || |||||||| | ||| || ||| || || || |||||||||| | Sbjct 71233 TAATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCAGTGAAG 71174 Query 97350 GAAAAATAGTTGCCATTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCCGTACATGGCG 97409 | | | |||| | | |||| | | ||||| |||||||| || |||||||| || Sbjct 71173 GGA---TTGTTGTCCT-CGTACCCGTGG--ACGCCAGTCCAGCCACGTCCGTACATTGCC 71120 Query 97410 ACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTCCAGTAACGCATCGACAGCGTAA 97469 || || || || || || || || | || ||||| | | || | ||| | || Sbjct 71119 ACTCCGACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGTATTTTACACCAAAA 71060 Query 97470 TGTGTAGTGTACAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGTTTGGTAGCCC 97529 | ||||| || |||| | ||||| ||| ||||| | | ||| |||| ||| Sbjct 71059 TCGGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCCC 71000 Query 97530 AAATCCGTGTTTGACCAAGCCCCTTTAAAATCGTAAGTCATGAGAAATATTTTGTCTAAT 97589 | | ||| |||||||| || || || || ||| |||| || || || | ||| | Sbjct 70999 AGAGTGTCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCATG 70940 Query 97590 GACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAGCCCGCGCTTATAGCG 97649 | ||||| |||| | ||||| || || || ||||| | || ||||| ||||| Sbjct 70939 TAGTTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGCT 70880 Query 97650 CTTGTTAATTCGTAAACCCTGCCGGTTTGCACTTCGA--GGTCGTCTAGCATTTCGCGCA 97707 ||| |||||||| ||| || ||| | | || | ||||| |||||||| || | Sbjct 70879 GATGTCAATTCGTATTTCCTACCAGTTG--AGTGAGAAAGTTCGTCAAGCATTTCACGGA 70822 Query 97708 GCTCATCCAACAACAGAATGTATGTTTTGGCGTCACGCTCCGCATCGCCCAGCGACGGGT 97767 | || | || | | ||| | |||| || || || | | | |||| Sbjct 70821 GTTCCTTCATGAGGTTGACGTAAACATCACCGTCTT-CTGGGCTTC--CAAAGGTAGGGT 70765 Query 97768 TAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTCCACA 97827 |||| ||||| || || || || |||||||| | ||| |||||||| ||||||||||| Sbjct 70764 TAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGG 70705 Query 97828 CTTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTTCAACGTCGTGCATGA 97887 ||| | || || || || || || || || |||| || ||| | | Sbjct 70704 TTTGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTCTTGTCAGTAAAAA 70645 Query 97888 AATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATGTGGGT 97947 | ||||||| || | || ||||| ||||| || ||||||||||| || || | || Sbjct 70644 AGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTC 70585 Query 97948 TTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGG 98007 | ||| |||| | ||||| ||| || || ||||||||||| ||||| ||||||| | Sbjct 70584 TCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATG 70525 Query 98008 ACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTTGAAAT 98067 | | || || || ||||| |||| ||| ||||| |||||||| || | ||||| || | Sbjct 70524 ATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGT 70465 Query 98068 CTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGG 98127 | ||||| || ||||| || ||||| || |||| |||||||| ||| || | Sbjct 70464 CCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAAC 70405 Query 98128 CGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGTGCGATAAAT 98187 |||||| || ||||| ||||| || || || || ||||| |||| | ||| | || || Sbjct 70404 TGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGTTAGAT 70345 Query 98188 TTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGACAAAGT 98247 | || | || || || ||||| || | | | ||| || ||||| || ||||| | Sbjct 70344 TGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAAT 70285 Query 98248 ACGC 98251 | || Sbjct 70284 AAGC 70281 >seq5066 Length=19128 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| | || || ||||| || || |||| ||||| | Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || |||| ||| ||| || |||||||| | ||| |||||| Sbjct 18910 GGATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCA 18969 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 ||| | | |||||||| ||||| ||| | ||||| || | ||||| | || || Sbjct 18970 ACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTAT--CAGACTAT 19027 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||||||||| ||||| |||||| |||| Sbjct 19028 AATATTCAAAAGGAGTCTACACTTCACTTGGT 19059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410755440593054