Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq566 131 2e-25 seq1957 114 1e-20 >seq566 Length=99533 Score = 131 bits (144), Expect = 2e-25 Identities = 335/505 (66%), Gaps = 4/505 (1%) Strand=Plus/Minus Query 65531 GGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTC 65590 ||||| ||||| || || || || |||||||| || | ||| | || ||||| | ||| Sbjct 70768 GGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTC 70709 Query 65591 CACGTCTGCAGAAACTcgcgcgccgactcgacgaacgcgcgg-cgcgcgctcgcgTC-GT 65648 || || || || ||||| | || || ||||| ||| | | | | || ||| || Sbjct 70708 CAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAA-GCGAGTTCTCTTGGTCTTGTCAGT 70650 Query 65649 GCATGTGATAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGT 65708 | || | |||||||| | || ||||| || || || || || || | ||||| Sbjct 70649 AAAAAAGA-AGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGT 70591 Query 65709 GCGGGTGCGCCTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCC 65768 || ||| | || | | |||||| || ||||||||||| ||||| || || ||| Sbjct 70590 CAGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCC 70531 Query 65769 ACGCGGTCACGCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAGCT 65828 | | | | || || || || ||||| | ||| ||||| || ||||| | | | | Sbjct 70530 AAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTT 70471 Query 65829 TGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACT 65888 | ||||| ||||| || ||| || || || || || | ||| || || |||| || Sbjct 70470 TAAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCT 70411 Query 65889 TGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCG 65948 | | |||||||| ||||| || || || || || || | || || ||||| || || | Sbjct 70410 TTAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAG 70351 Query 65949 TGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACGCCCCACTCGA 66008 | || ||||| | || || ||| |||| || | | | ||| |||||||| || | Sbjct 70350 TTAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCA 70291 Query 66009 CGAAGTAGGCGGCCACCACCTTGCC 66033 | || || ||| | || || || || Sbjct 70290 CAAAATAAGCGCCAACTACTTTTCC 70266 >seq1957 Length=467265 Score = 114 bits (126), Expect = 1e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 |||||| || || || ||||| | || || || || ||||||| || ||||| ||| Sbjct 419410 TTTGTTTAATGCTATTGAGACATTACCCTGTGTAAAGAAGAAGGCTGACTGGGCTATGCA 419469 Query 117004 CTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 ||||| || ||| ||| || | ||||| || || | || || || || || || | Sbjct 419470 ATGGATTGCAAGCA-AGACTGCAACTTTCGGTGAACGTATTGTAGCTTTTGCTGCAGTTG 419528 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 | ||| | ||||| || || || || || | ||||| ||||||||||| | || || | Sbjct 419529 AAGGCATATTCTTCTCTGGAAGCTTTGCATCAATATTCTGGCTCAAGAAGAGGGGACTTA 419588 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || ||||||||||||| ||||| || || ||||| |||| Sbjct 419589 TGCCAGGATTGACTTTCAGCAATGAGCTGATTTCAAGGGATGAGG 419633 Score = 102 bits (112), Expect = 8e-17 Identities = 140/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 116978 AAAGA-GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCG 117035 ||||| |||||| || ||||| ||| ||||| || ||| ||| || | ||||| | Sbjct 418803 AAAGAAGAAGGCTGACTGGGCTATGCAATGGATTGCAAGCA-AGACTGCAACTTTCGGTG 418745 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || | || || || || || || || ||| | ||||| || || || || || | | Sbjct 418744 AACGTATTGTAGCTTTTGCTGCAGTTGAAGGCATATTCTTCTCTGGAAGCTTTGCATCAA 418685 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 |||| ||||||||||| | || || ||||| || ||||||||||||| ||||| || | Sbjct 418684 TATTCTGGCTCAAGAAGAGGGGACTTATGCCAGGATTGACTTTCAGCAATGAGCTGATTT 418625 Query 117156 CCAGGGACGAGG 117167 | ||||| |||| Sbjct 418624 CAAGGGATGAGG 418613 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 || ||||||||| | || ||| ||| |||||||| ||||| || | || || Sbjct 418861 AGTGACTGGGAGACACTAAAGGACTGCGAAAAACATTTCATTAAGCATGTATTAGCGTTC 418920 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 || || || || ||||| ||||| ||||| || || || || || | || || ||| Sbjct 418921 TTTGCTGCATCAGATGGCATAGTCAATGAGAACCTTGTGGAACGCTTTTCACAAGAAGTG 418980 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| | || || |||| ||||| ||||||||||| || ||||| || || ||||| Sbjct 418981 CAGGTGACAGAAGCTAGGTGTTTCTATGGCTTTCAGATTGCTATGGAAAATGTACACTCA 419040 Query 116888 GAAATGTATTC 116898 || ||||| || Sbjct 419041 GAGATGTACTC 419051 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| | || ||||||||||| || || || |||||||| || ||||| || Sbjct 418335 GAACCCCTGCTGAGAGAAAACCCCCGCCGCTTTGTTATATTCCCCATCCAGTACCCTGAT 418394 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||| || ||||| || || ||||| || || || || || || Sbjct 418395 ATATGGCAAATGTACAAAAAAGCAGAGGCCTCCTTTTGGACTGTTGAAGAAGTTGATCTA 418454 Query 116696 TCCAAGG 116702 || |||| Sbjct 418455 TCTAAGG 418461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515165997177360