Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5066 136 6e-27 seq865 100 4e-16 seq1988 98.7 1e-15 >seq5066 Length=19128 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || ||||| ||| |||| ||||| || Sbjct 18623 ATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACCATCC 18682 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | ||| ||| |||||||| |||||||| || || || ||||| Sbjct 18683 GATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCAG 18742 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| ||||| || | || ||| ||||||| ||| |||||||| Sbjct 18743 CAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTATAAC 18802 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || || ||| ||||| | || | || ||||| || Sbjct 18803 ATTCAAAAAGAATCTACCTTACATCTGGTTCTCCGGCTTCGTGGTGGAAT 18852 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || || ||||| ||||||||||| | || ||||| | Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| || |||||||| |||||||| || || || ||||| Sbjct 18910 GGATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCA 18969 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| || || ||| | || || |||| ||| || ||| ||||| Sbjct 18970 ACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCAGACTATAA 19029 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || || || | || ||||| | ||| | || |||||||| Sbjct 19030 TATTCAAAAGGAGTCTACACTTCACTTGGTACTTCGTCTCCGTGGTGGTAT 19080 >seq865 Length=175398 Score = 100 bits (110), Expect = 4e-16 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 202868 ccAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 |||||||| ||||| || || | |||||| | | ||| | ||||||||| | Sbjct 29358 CCAACATAGCCATTAGGGTCTCTTCCATCGACACTATAATGATCATTTAAGTATATAGCA 29417 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 | ||| ||||| || || ||||||||| | ||||| ||| ||| ||||| Sbjct 29418 TATTTTAGTGCATCTTCAGGGGACGGTGTCCATTCAAGAATTTTCTTACACCAGTACATC 29477 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 | || ||||||||||||| || | | || |||| ||| | |||||||||||| Sbjct 29478 CGCAAGAATCCATGCATTTTCCCTTCCTGTACCAATTGTAATTGAGCTGCATTCCATAAG 29537 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107 | |||||| || || ||| ||||| | |||||| ||||||| | | || | || Sbjct 29538 TCGTCATGGGTCTTGGCTTTTGAGAGTTGTTCTAAACTGTATATATATGTCCTTTTGTCC 29597 Query 203108 TTTTTATG 203115 ||| |||| Sbjct 29598 TTTCTATG 29605 >seq1988 Length=441106 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 205438 AAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGT 205497 ||||| |||| |||||||||||| | ||||||||| |||||| |||| ||||| || Sbjct 380041 AAATTGGTTACATGTGCAATCATGTGTGTCAATAAAGCATAACTTGCAATGTTAAAGGGA 379982 Query 205498 ACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTA 205557 ||||| || ||||||||||| |||||| |||| | | || | | |||| || Sbjct 379981 ACACCCAAGCCCATATCAGCACTTCTTTGGTACAATAGGCAGGACA---ATTTTCCCTTG 379925 Query 205558 ATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATA 205617 |||||||| ||| | || || ||||| ||||| | |||| || | | ||| | Sbjct 379924 GCCACATGAAACTGTGCTAAGCAGTGACATGGTGGAAGTGCCATTTTGCCTAGATCAGAA 379865 Query 205618 GGATTCCAGG 205627 ||| |||||| Sbjct 379864 GGAATCCAGG 379855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755377989724800