Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq566 152 4e-32 seq5066 109 5e-19 >seq566 Length=99533 Score = 152 bits (168), Expect = 4e-32 Identities = 337/497 (68%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 21576 TGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGC 21635 ||||| | || ||||| |||||||| || |||| ||| ||||||||||||| || | Sbjct 70277 TGGCG-CTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTAC 70335 Query 21636 CGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCA 21695 | || |||||| | || | || || || || | || || || || || || |||| Sbjct 70336 CAATTCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCA 70395 Query 21696 TCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGG 21755 | |||||| |||| | || ||||| | ||| | |||||||| || | Sbjct 70396 TTAACGACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTG 70455 Query 21756 GTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAA 21815 |||| | || || || || |||| |||||||| ||||| || |||| || || || | Sbjct 70456 GTCGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGA 70515 Query 21816 AGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGA 21875 | || | || || ||||| ||||| |||||||||||||| |||||||||||| || ||| Sbjct 70516 AAGGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGA 70575 Query 21876 AGAGGGCCAATCCTCACATTAA-AGTGTTCGCATCGATCGGCGGATGGACTCTGTCCGAT 21934 | || | ||| || | || | | ||| | || || || |||||||| || | ||| Sbjct 70576 AACAAGCGAGACCTGACCTGAAGATTCTTC-CTTCTATTGGAGGATGGACATTGGCTGAT 70634 Query 21935 CCATTTTATCATATGCAC-GAC--GCCGACGTCAGACGGGTGTTTATCGATTCAGTTGAA 21991 || || | || | | || ||| | | | | ||| || | || ||||| || Sbjct 70635 CCGTTCT-TCTTTTTTACTGACAAGACCAAG--AGAACTCGCTTCGTTGACTCAGTCAAA 70691 Query 21992 GAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGC 22051 || || || | || ||||| || | || || || |||| ||||||||||| || || Sbjct 70692 GAGTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGT 70751 Query 22052 GGCAAGGGAGCCAACCC 22068 || || || || ||||| Sbjct 70752 GGTAAAGGCGCTAACCC 70768 >seq5066 Length=19128 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCT 118587 |||||||| | ||||||||| |||||||| || || || | |||||| || || | Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTC--TGATAGTGTACGACCGTCTT 19002 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | || || || ||||| |||| | |||||| ||||| || || ||||| || |||||| Sbjct 19001 CAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTT 18942 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||| ||| || | |||| || |||| || || |||| || | |||| Sbjct 18941 GAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTT 18882 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || |||||||| || ||||||||||| Sbjct 18881 TACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| |||||||||||||| |||||| | || || ||| || ||||| |||||| Sbjct 18819 GTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCAAGCTGCTTTCCA 18760 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| |||||||| || || ||||| || |||||| ||| || |||| Sbjct 18759 GCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTA 18700 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||||| ||| || | || | || || || | || | || || || || ||||| Sbjct 18699 ACGTTTTCGATGGTATCGGATGGT-TCAACTTCTAAAGTAATAGTCTTACCCGTGAGAGT 18641 Query 118721 TTTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 18640 CTTCACGAAAATCTGCAT 18623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433786721548612