Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5371 118 2e-21 seq5066 107 3e-18 >seq5371 Length=18321 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 ||| || || || || |||||||| ||||||||||| || || | |||| ||||| || Sbjct 6137 AGCGGGTGTCATAGATGAAGATTACAGAGGAAATGTTGGTATAGTGCTATTCAATCACTC 6196 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | || |||| ||| || | || | ||| |||||||| ||||| |||| |||||| ||| Sbjct 6197 TGATCAAGACTTTGTAGTTAAAAAAGGTGATAGAATTGCTCAACTAATTTGTGAAGTAAT 6256 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678 || || || || | || | || ||||||||| | ||||| ||||| | || ||| Sbjct 6257 TTATTACCCAGAATTACTAGAGGTTGATAGTTTAACCGAAACCAAAAGGGCAAATGATGG 6316 Query 10679 TTTTGGATCTACTGG 10693 ||||| ||||| || Sbjct 6317 ATTTGGCTCTACAGG 6331 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10362 AGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATT 10421 ||||| ||||| ||||| || | ||| | ||| ||||| ||||||| |||||| Sbjct 3616 AGTGCCTATGAATATATAGTACCTGCAAGAGGCAAAGAATTAGTAAAAACAGATTTACAA 3675 Query 10422 ATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAAT 10481 || ||| | ||| | || ||||||| ||| | ||||||||||||| || || | || Sbjct 3676 ATTGAACTGCCTCATGGGTGTTATGGTAGAGTGGCTCCCAGATCTGGATTGGCAGTCAAA 3735 Query 10482 AAATTTATTGATATTGGAGCTG 10503 || ||||||||| |||||| || Sbjct 3736 AACTTTATTGATGTTGGAGGTG 3757 >seq5066 Length=19128 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | |||| |||||| ||||||||||| || |||||||| | Sbjct 18851 TTCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGG 18792 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||| | ||| || | || ||||||||||||||||| | ||||||||| || | Sbjct 18791 ATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGG 18732 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| ||||| Sbjct 18731 GAATGCCTTCTTTGTCTTG 18713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743449621605120