Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1957 100 3e-16 >seq1957 Length=467265 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 |||||||| ||||| | || || | ||| ||||| | ||||| ||||| |||||| Sbjct 419595 CCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAAT 419536 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || ||||||||||| ||||| || || | || |||||| | ||| | | || ||| | Sbjct 419535 ATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCA 419476 Query 16415 atccattttttagcccaatttgctttttgtttAACACA-GTTCATGTTCTCTATTGCATT 16473 ||||||| ||||||| | || || | || ||||| | | ||| |||| || ||||| Sbjct 419475 ATCCATTGCATAGCCCAGTCAGCCTTCTTCTTTACACAGGGTAATG-TCTCAATAGCATT 419417 Query 16474 AAATAAA 16480 ||| ||| Sbjct 419416 AAACAAA 419410 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 |||||||| ||||| | || || | ||| ||||| | ||||| ||||| |||||| Sbjct 418651 CCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAAT 418710 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || ||||||||||| ||||| || || | || |||||| | ||| | | || ||| | Sbjct 418711 ATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCA 418770 Query 16415 atccattttttagccca 16431 ||||||| ||||||| Sbjct 418771 ATCCATTGCATAGCCCA 418787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462464239854600