Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq1957 109 5e-19
>seq1957
Length=467265
Score = 109 bits (120), Expect = 5e-19
Identities = 161/226 (71%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283
||||||| || ||| || || || ||||| || ||||||||||| | ||| | ||
Sbjct 419633 CCTCATCCCTTGAAATCAGCTCATTGCTGAAA--GTCAATCCTGGCATAAGTCCCCTCTT 419576
Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343
|| | ||| ||||||| || || ||| || |||||||| || ||||||||||||||
Sbjct 419575 CTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAA 419516
Query 14344 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14403
|||| | ||||| || || | ||| | ||| | | ||||||| ||||||| ||
Sbjct 419515 AGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTC 419456
Query 14404 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449
|| || || || | | | | ||| |||||||||||||| |||
Sbjct 419455 AGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAACAAA 419410
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
||||| |||||||| | || ||||| || ||||||| ||||||||||| ||||||
Sbjct 419072 ATGTAAGTATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGA 419013
Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593
|| ||||| ||||| |||||||||| | || || ||| |||| | ||| | |
Sbjct 419012 AAGCCATAGAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGG 418953
Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14649
|| ||||| ||||| ||||| || ||||| || || |||| | ||||| ||
Sbjct 418952 TTCTCATTGACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAA 418897
Score = 93.3 bits (102), Expect = 4e-14
Identities = 131/182 (72%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283
||||||| || ||| || || || ||||| || ||||||||||| | ||| | ||
Sbjct 418613 CCTCATCCCTTGAAATCAGCTCATTGCTGAAA--GTCAATCCTGGCATAAGTCCCCTCTT 418670
Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343
|| | ||| ||||||| || || ||| || |||||||| || ||||||||||||||
Sbjct 418671 CTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAA 418730
Query 14344 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14403
|||| | ||||| || || | ||| | ||| | | ||||||| ||||||| ||
Sbjct 418731 AGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTC 418790
Query 14404 AG 14405
||
Sbjct 418791 AG 418792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482295791787480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |