Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq1988 104 3e-17 >seq1988 Length=441106 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 15/170 (9%) Strand=Plus/Plus Query 104575 AAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAAT 104634 |||||||||||||| || ||||| || ||||||| ||| |||| | ||| Sbjct 379878 AAAATGGCACTTCCACCATGTCACTGCTTAGCACAGTTTCATGT--GGCCAA-------- 379927 Query 104635 GGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTT 104694 || |||| ||||| || | || | |||||| ||| |||||||| ||||| ||| Sbjct 379928 GGGAAAA-----TTGTCCTGCCTATTGTACCAAAGAAGTGCTGATATGGGCTTGGGTGTT 379982 Query 104695 CCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGT 104744 || |||||||| ||||||||||| ||||| ||||| || || || ||||| Sbjct 379983 CCCTTTAACATTGCAAGTTATGCTTTATTGACACACATGATTGCACATGT 380032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679744200665520