Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq566 206 2e-48 >seq566 Length=99533 Score = 206 bits (228), Expect = 2e-48 Identities = 350/501 (70%), Gaps = 6/501 (1%) Strand=Plus/Minus Query 91450 CCAATGGCCGGATTAGCGCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCA 91509 |||| || || |||||||||||||| || || || ||||||||||| || ||||| || Sbjct 70777 CCAAAGGTAGGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCG 70718 Query 91510 AAAAATTTCCAAACTTGCAAAAATTCTTTAACCGAATCAACGAA-CACGTT-TCTTCGT- 91566 ||||||||||| ||| | || ||||| || || |||||||| | ||| |||| || Sbjct 70717 AAAAATTTCCAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTC 70658 Query 91567 TTGACATCGTGCATAAAATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAA 91626 ||| || || | || | ||||||| || | ||| ||||| || || || || || | | Sbjct 70657 TTGTCA--GTAAAAAAGA-AGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGA 70601 Query 91627 ACTTTTAAATGCGGGTTGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAA 91686 | || | | || | || || | ||| | ||||| |||||||| ||||| Sbjct 70600 ATCTTCAGGTCAGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTAT 70541 Query 91687 GGCTCGTTCCAAGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGT 91746 || || ||||||| |||| |||||| || ||||| |||| ||||||||| |||||||| Sbjct 70540 GGTTCATTCCAAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGA 70481 Query 91747 ATGGAAACTTTAAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCA 91806 || || |||||||| || ||||| || |||| || ||||| | || ||||| || Sbjct 70480 ATAGATACTTTAAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCT 70421 Query 91807 GGTATTGTTTTGAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTAC 91866 ||| || | ||||| | ||||| || || ||||| || |||||||| ||| Sbjct 70420 TCGATTTCCTTTAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATAC 70361 Query 91867 AACAGATGGGACAAATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACG 91926 | || || | | ||| || | || || |||| || || || | ||| ||| Sbjct 70360 AGAAGGTGAGTTAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACG 70301 Query 91927 CCCCATTCAACAAAGTACGCG 91947 |||||||| ||||| || ||| Sbjct 70300 CCCCATTCCACAAAATAAGCG 70280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379305807290445