Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq566 253 2e-62 >seq566 Length=99533 Score = 253 bits (280), Expect = 2e-62 Identities = 778/1190 (65%), Gaps = 21/1190 (2%) Strand=Plus/Minus Query 35666 CCAATATGCATAGCGTTGAGCAAATCGCCGTTGTCCGCATCGATTTCCCATGCGAATAAT 35725 || || | ||| |||||||| | ||| ||||| || || || |||||||| ||||||| Sbjct 71461 CCCATGTTCATTGCGTTGAGTAGATCTCCGTTATCAGCGTCTATTTCCCAGGCGAATAGA 71402 Query 35726 CCGCCGAGTCTACGCTGAAGCACGTATTCGCCTTTGGCCAGTACCGATCTTTCGCTGTCA 35785 ||||||||| || | |||||||| |||||| | | || ||||| || |||| Sbjct 71401 CCGCCGAGTTTATTATTTCTCACGTATTTGCCTTTTTCGATGACGGATCTAGCGTTGTCG 71342 Query 35786 TACGATATTAAGTCGCCAGAGGCGCGGTC-GAATACGTACGCAGCCTTGGCCACGTCGTC 35844 || | || | ||| |||| || ||||| ||| ||||| | || | || |||| || Sbjct 71341 TAAGTTACAAGGTCCCCAGTGGA-CGGTCTGAACACGTATGGTGCTTGTGCTACGTTATC 71283 Query 35845 G-AATGCGTATTCGTAAC------GCGAAATGTTTTTAGCAATCTGTCTGTAGTCGACCA 35897 | |||| | |||| | | | ||| | || || || | |||||| ||||| | Sbjct 71282 GTAATG-GAATTCCCATTTTCCCTGGGCAATTTCGTTCGCTATTTCTCTGTAATCGACTA 71224 Query 35898 CGCCGTTTTCCCATGTACCCGTGATCGGTCCGACGGCTACGCCACTGAATGGATTGTCAC 35957 | |||| || ||| || ||| ||| ||||| || |||| |||| ||||||| Sbjct 71223 CACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCAGTGAAGGGATTGTTGT 71164 Query 35958 TGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCGTACATTGCTACGCCCAACACGAGtt 36017 | ||| ||||||||| ||||| || || ||||||||||| || || | | || | Sbjct 71163 CCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTACATTGCCACTCCGACGATGATCT 71104 Query 36018 tttttGGATTCACTCGTTGCGCGAGCAAAGCGTCCACGGCCACGTTGGCGGTGTACGGTT 36077 | || || ||||| | ||| || | ||| | || | | | || || || | || Sbjct 71103 TCTTCGGGTTCACACCTTGAGCTAACAAGTATTTTACACCAAAATCGGTAGTATAAGTTT 71044 Query 36078 CGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTCTGATGACCGAGATCGGTATTAGACC 36137 | ||||| ||||| | | | |||| | | ||||| || || ||| | ||||||| Sbjct 71043 CTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCCCAGAGTGTCGTTAGACC 70984 Query 36138 AAGCTCCTTTGAAATCATAACTCATCACGAAAATTTTATCTAAATACTGTTGTGCTCGGT 36197 ||||||| ||||| ||||||||||||| |||||| | || | || | ||| ||| | Sbjct 70983 AAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCATGTAGTTTTGGGCTTTGC 70924 Query 36198 CGTAATTAACCGCGGCGATCTTGTCTATGCCAGCGCTAATCGCTGTGGTGAGTTCTAAAG 36257 ||| | ||| | ||| ||||| |||||||| || |||| || | ||| | Sbjct 70923 TGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGCTGATGTCAATTCGTATT 70864 Query 36258 TACGATTCGTTTGTATTTG-AACTTGATCGAGCATGGCGCGCAATTCGCCCAATAAAGCG 36316 | | | | ||| | | || || || ||||| | || | ||| || | | Sbjct 70863 TCCTA-CCAGTTGAGTGAGAAAGTTCGTCAAGCATTTCACGGAGTTCCTTCATGAGGTTG 70805 Query 36317 ATATACGTGTTATTGTCGCGTTCCACATCGCCAACGTTTGGATTGGCGCCTTTGCCGCCC 36376 | || | | ||| ||| |||| | | || || |||||||| || || Sbjct 70804 ACGTAAACATCACCGTC---TTCTGGGCTTCCAAAGGTAGGGTTAGCGCCTTTACCACCA 70748 Query 36377 GGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCATGTCAACACAAATTCACGC 36436 || || ||||||||||| || | || |||||||||||||| || | || || Sbjct 70747 GGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGGTTTGAAGGAACTCTTTG 70688 Query 36437 ACGGATTCGACAAA--AATTTGTCGCGTTCGCG-CATCGTGCATATGATAGAAGGGATCG 36493 || || || || || | || || | || | || || | | || |||| ||||| Sbjct 70687 ACTGAGTCAACGAAGCGAGTTCTCTTGGTCTTGTCA--GTAAAAAAGA-AGAACGGATCA 70631 Query 36494 GACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGGGATTGGCCAATTTTGCT 36553 | || |||||| || || || || | | | || || | || | || ||| | Sbjct 70630 GCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTCGCTTGTTTCAAT 70571 Query 36554 GCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCCATGCGCTAACGCCTGTTTGT 36613 | ||| | |||||| || ||||||||||| ||||| ||||| | | ||| | || Sbjct 70570 GACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGATAGACCTTTCTGA 70511 Query 36614 GGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACTTTAAAATTGTCCCTGCCAGCG 36673 ||||| || | || ||||| |||||||| || || |||||||| | || | ||| | Sbjct 70510 GGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCCTCGCGACCACTG 70451 Query 36674 CACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGATTTTAAACTGTCGTTTATACCG 36733 || || | ||| | |||| ||||| || ||| |||||||||||||| || || Sbjct 70450 CAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACTGTCGTTAATGCCA 70391 Query 36734 TCACCGCCGCAAATCGGTATAAATCCGTATAAAATGTGCGAAAGGTTCGGCGTGGGCACT 36793 || || || ||||| || ||||| || || | || ||| | || || || | || || Sbjct 70390 TCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGTTAGATTGGGAATTGGTACG 70331 Query 36794 TTGTCCACGGGAAAAGATCGACCGTAAACGCCCCATTCGACAAAATAGGC 36843 || ||||| || | ||||||||||||||| |||||||| || Sbjct 70330 CGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAATAAGC 70281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418261884761120