Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq538 691 0.0 seq1957 125 6e-24 seq5066 118 9e-22 seq566 105 6e-18 >seq538 Length=46986 Score = 691 bits (766), Expect = 0.0 Identities = 1224/1776 (69%), Gaps = 17/1776 (1%) Strand=Plus/Plus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || ||||| || || || || || || ||||| || || | ||| ||||| Sbjct 41438 GTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATT 41497 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || || |||| ||||||||||| || || |||||||| || || |||||||||||| | Sbjct 41498 CCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTT 41557 Query 22223 GG--CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280 || || | |||| | | || || |||||||||||||| ||||||||||||| ||| | Sbjct 41558 GGTTCAGCTACATGAATA--TTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTG 41615 Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 | ||||| | ||| ||| || || |||||||| || |||||||| | | ||| | Sbjct 41616 CAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTA 41675 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 | | | || ||| ||| || | || | || || || ||||| || |||||||||| Sbjct 41676 TTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTT 41735 Query 22401 TAATCGTATCGTTCCACAAACC-GATGGCGGTCAAATCTTTGACCAGATGACGGTTCACC 22459 | || || | ||| || | | | | ||| |||||| | | |||||| |||| || Sbjct 41736 TCATATCTTCATCCCATAAGTCAGCTTG-GGTTAAATCTGTTAAGAGATGATGGTTAACA 41794 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 ||||||||||| || || || || ||||||||||||||||| || || || ||||| ||| Sbjct 41795 ACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAA 41854 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 |||||||| ||||| |||||||| || || ||||| || ||||| || || |||| || Sbjct 41855 GATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGG 41914 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA-GCATCGACCAGTCCCACAGATC 22638 || || | | || ||||||| |||||| || || | ||| | ||| ||||||||||| Sbjct 41915 GAATTACGAAGACCATGCTTTGCAATTTTTCTTTTAAGGCA--GTCCAATCCCACAGATC 41972 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 | || ||| ||||||||||| || ||||| || | ||| |||| || || || || Sbjct 41973 AGTAGGAGTC---TTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCC 42029 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 || || | ||| ||| | || | || | ||| || || || || || || || Sbjct 42030 ATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCC 42089 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGG 22818 || |||||||| || || |||| | || | | || | | || || || || Sbjct 42090 ATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGG 42149 Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 | | ||| | ||| || || || || | |||||||| || || || || || | | Sbjct 42150 AAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATG 42209 Query 22879 TTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTT 22938 ||||| |||||| ||||| || |||| ||||| | || ||| || | | || Sbjct 42210 TTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATT 42269 Query 22939 CAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGA 22998 || ||| || ||| |||| || | | ||| | |||| | | Sbjct 42270 TAAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAAT--TAAAAGTTTTA 42327 Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 || | |||||||| | || || || || || || | |||||| || ||||| || || Sbjct 42328 TT-TTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAGG 42386 Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 || || ||||| |||||||| || || || ||||| || ||||| ||||| | ||| | Sbjct 42387 TGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTT 42446 Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 || || ||||||| ||||| ||||| || || | ||| || || || || || || || Sbjct 42447 TTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAAC 42506 Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCC 23238 || | || || || ||| ||||| | ||| || |||| || || || | Sbjct 42507 TTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACATAGCGTTT 42566 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 ||||| || ||||||| || || || |||||||| |||| |||| || |||| || Sbjct 42567 TTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCC 42626 Query 23299 -GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAA 23357 |||| ||| |||||||| |||||||| || | ||||| || ||| |||||| Sbjct 42627 AGGGCAGTTG-TGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGTTTCATAA 42685 Query 23358 AAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGG 23417 | | ||| |||||||||| ||| ||||| | ||| | || || || || ||||| || | Sbjct 42686 ACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACTTCTTCTTTACCAG 42745 Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 | |||||||| ||||| ||||| || || || || || ||||| || || | || || | Sbjct 42746 TATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATACACTG 42805 Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537 |||| || || || | || || || || ||||| || || | ||| ||||| || || | Sbjct 42806 CAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTATTATAGA 42865 Query 23538 CTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT 23597 |||||| ||| || || ||||| ||||| || | || || | | | |||| Sbjct 42866 CTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAGTTCCTT 42925 Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 | |||| | | || || || | ||| || ||||| | || || || || | || | Sbjct 42926 TAGCTCTTATGCAATGCACATGAACACCGATACCTCCAGCTGACTTGGAAATTAATGCAC 42985 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 ||||||| || || || || || || ||||| ||||| ||||| | || || | ||||| Sbjct 42986 ATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTACAAGGAAAC 43045 Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA 23777 | ||||||| ||| | | | || || || || || |||| ||| ||||| || || |||| Sbjct 43046 AAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGCATGAGTAA 43105 Query 23778 AGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTA 23837 | ||| | || | | |||||| |||| || || ||||| || || || ||||||| Sbjct 43106 AATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCTTCCCCGTGTA 43165 Query 23838 TACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 | || | || || ||||||| ||| | || |||| Sbjct 43166 TGCCAACAGCAACACGCATCAGCATATGCTGGGGTC 43201 >seq1957 Length=467265 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 57634 AGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGT 57693 |||||| || || ||||| | || || || | || | | |||| ||||| || || | Sbjct 418853 AGGATCAAAGTGACTGGGAGACACTAAAGGACTGCGAAAAACATTTCATTAAGCATGTAT 418912 Query 57694 TGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCAC 57753 | ||||| || || ||||| ||||| || || || ||||| | || ||| | ||||||| Sbjct 418913 TAGCGTTCTTTGCTGCATCAGATGGCATAGTCAATGAGAACCTTGTGGAACGCTTTTCAC 418972 Query 57754 AAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACG 57813 |||||||||| ||||| || || || || || || || ||||| | || || ||||| | Sbjct 418973 AAGAAGTGCAGGTGACAGAAGCTAGGTGTTTCTATGGCTTTCAGATTGCTATGGAAAATG 419032 Query 57814 TGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860 | || ||||| ||||| || | | || ||||| ||| | | |||| Sbjct 419033 TACACTCAGAGATGTACTCTTTGTTAATTGATACTTACATCAGGGAC 419079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 58320 CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACA 58379 || |||||||| || || ||||| || || |||||||| ||||| | || || || || Sbjct 421690 CACTACAACACAAAGAACCCGTTCGACTTCATGAATCTCATCTCATTGGAAGGGAAAACT 421749 Query 58380 AACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439 || || || || ||||| ||| | |||||||| |||| || |||||| | ||| Sbjct 421750 AATTTCTTTGAGAAAAAGGTTGGAGAATATCAGAAATGGGGAGTGATGGCCA-----AAG 421804 Query 58440 TTGGAGGACGATATTTTCACTTTGGATGCTGCCTTTTAAT 58479 | | ||| || | |||||||||||||||| ||||||| Sbjct 421805 CTA-ACGACAATGTGTTCACTTTGGATGCTGAATTTTAAT 421843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568 |||||| || || ||| || ||||| | ||||| || || || || | || || || Sbjct 418334 TGAACCCCTGCTGAGAGAAAACCCCCGCCGCTTTGTTATATTCCCCATCCAGTACCCTGA 418393 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 || ||| | ||||||||||| ||||| || || |||||||| || |||||||| || || Sbjct 418394 TATATGGCAAATGTACAAAAAAGCAGAGGCCTCCTTTTGGACTGTTGAAGAAGTTGATCT 418453 Query 57629 GTCTAAGG 57636 ||||||| Sbjct 418454 ATCTAAGG 418461 >seq5066 Length=19128 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| |||||||| || || || || || || | || |||||||| Sbjct 18620 AAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACCA 18679 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | |||||| || ||| || || ||||| |||||| | || || || Sbjct 18680 TCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCAGAT 18739 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| ||| | || || ||||| || ||| | ||||| | || | ||||||| Sbjct 18740 CAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTAT 18799 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||||||||| || | |||||||| || Sbjct 18800 AACATTCAAAAAGAATCTACCTTACATCTGGTTCT 18834 >seq566 Length=99533 Score = 105 bits (116), Expect = 6e-18 Identities = 205/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 41496 AGGATTAGCGCCCTTGCCTCCGGGAAACTCCCAGTCTATGTCGACTCCGTCGAAAAATTT 41555 ||| |||||||| || || || || |||||||| || ||||| || || ||||||||||| Sbjct 70769 AGGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTT 70710 Query 41556 CCAAGTGTTTAAAAATTCTCGGACCGAATCGACAAACGTCGCCCGGTTGGACGGATCATT 41615 ||| || | | || ||| ||| || || || || | | |||| | ||| | Sbjct 70709 CCAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTCTTGTCAGT 70650 Query 41616 CATATAATAGAACGGATCCGACAGAGTCCAACCGCCTATAGACGGTAAAATTTTCA-ATG 41674 | | | |||||||||| | || ||||| || || ||||| || | ||| |||| | Sbjct 70649 AAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTC 70590 Query 41675 ATTTCAACGATCGCTTTGCGGCCATCATCTGGCCAAAATTACCTTTGATAGGTTCGTTCC 41734 | || || | | || | ||||| || || || || |||||| ||||| |||| Sbjct 70589 AGGTC-TCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCC 70531 Query 41735 AATCGCTAACGCCTTTGAGAGGTTTCTGTACTGCGGCCCAGGGATCGTGTATGGCCACTT 41794 || | ||||| |||||||||||| || |||||||||||||| || | |||| Sbjct 70530 AAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTT 70471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445720369047120