Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1957 98.7 2e-15 seq538 93.3 8e-14 seq1988 89.7 1e-12 >seq1957 Length=467265 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGA---TTTGGCGGAA 101911 |||||||||| | |||||||| | ||||| |||||| | | ||| | ||| Sbjct 418802 AAGAAGAAGGCTGACTGGGCTATGCAATGGATTGCAAGCAAGACTGCAACTTTCGGTGAA 418743 Query 101912 CTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATT 101971 | ||||| || ||||||||||||||||| || ||||| ||| || ||||| || Sbjct 418742 CGTATTGTAGCTTTTGCTGCAGTTGAAGGCATATTCTTCTCTGGAAGCTTTGCATCAATA 418683 Query 101972 TTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCT 102031 |||||| ||||||| ||||| || |||| || | || | | ||||||| | ||||| Sbjct 418682 TTCTGGCTCAAGAAGAGGGGACTTATGCCAGGATTGACTTTCAGCAATGAGCTGATTTCA 418623 Query 102032 AGGGACGA 102039 ||||| || Sbjct 418622 AGGGATGA 418615 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGA---TTTGGCGGAA 101911 |||||||||| | |||||||| | ||||| |||||| | | ||| | ||| Sbjct 419444 AAGAAGAAGGCTGACTGGGCTATGCAATGGATTGCAAGCAAGACTGCAACTTTCGGTGAA 419503 Query 101912 CTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATT 101971 | ||||| || ||||||||||||||||| || ||||| ||| || ||||| || Sbjct 419504 CGTATTGTAGCTTTTGCTGCAGTTGAAGGCATATTCTTCTCTGGAAGCTTTGCATCAATA 419563 Query 101972 TTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCT 102031 |||||| ||||||| ||||| || |||| || | || | | ||||||| | ||||| Sbjct 419564 TTCTGGCTCAAGAAGAGGGGACTTATGCCAGGATTGACTTTCAGCAATGAGCTGATTTCA 419623 Query 102032 AGGGACGA 102039 ||||| || Sbjct 419624 AGGGATGA 419631 >seq538 Length=46986 Score = 93.3 bits (102), Expect = 8e-14 Identities = 199/286 (70%), Gaps = 11/286 (4%) Strand=Plus/Plus Query 93798 CCCCATGTCAAATTGGAAAATCCCTTTGCTCAAAGGACTACCCTCAAACAGCTCATATGT 93857 || ||||||| |||| ||||| |||| || |||||| || ||| | || | | || Sbjct 41988 CCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATCATAA--CT-AGA-GT 42043 Query 93858 TTCTCCCTT--TTCTTTGGCAATTTCACATGAAGCTTCCAAGGCACCATAGTATATAGTT 93915 |||| |||| || ||||| |||| |||||| || || ||||||||||||||| Sbjct 42044 AAACACCTTCCTTCTCTGCCAATT-CACAACTAGCTTCTAAAGCTCCATAGTATATAGTT 42102 Query 93916 TCAAAAATCCTCTTG-TTAATTAGTGCCGCTTCTTCAGATTCGAAGGGGATTCTGAGTTT 93974 ||||| || | ||| |||| || ||||||||| || |||| | ||| | | Sbjct 42103 TCAAATAT-TTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGGAAATCTCATTAA 42161 Query 93975 GAAGAACAAATCTGCTAGTCCCTGCACACCCAATCCCATTGGCCTAGTTTTCATATTGGA 94034 | || |||||||| |||||| ||||| | || || |||||| ||||||||| | Sbjct 42162 CACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTTCATATTCG- 42220 Query 94035 AATGCGGGTCTTGT-CAACTGCATAGAAATTGACATCAATCACCTT 94079 ||| | ||| | |||| |||||| || |||||||| | ||| Sbjct 42221 AATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTT 42266 >seq1988 Length=441106 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 ||| | ||||| ||||||||||||| | ||| | |||| |||| ||||| | Sbjct 379818 AGAAATAATCCCAGTGATAGAAGGATGTTAATGTGCTCCTGGATTCCTTCTGATCTAGGC 379877 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATT 35634 ||||| ||||| ||||| ||| || | || || ||| ||||||| || ||| |||| Sbjct 379878 AAAATGGCACTTCCACCATGTCAC-TGCTTAGCACAGTTTCATGTGGCCAAGGGAAAATT 379936 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||| |||| ||||| || |||| | ||| | || ||||| || ||||| || ||||| Sbjct 379937 GTCCTGCCTATTGTACCAAAGAAGTGCTGATATGGGCTTGGGTGTTCCCTTTAACATTGC 379996 Query 35695 A 35695 | Sbjct 379997 A 379997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989479258409255