Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq538 499 4e-136 >seq538 Length=46986 Score = 499 bits (552), Expect = 4e-136 Identities = 1200/1797 (67%), Gaps = 40/1797 (2%) Strand=Plus/Plus Query 62024 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62083 ||| | |||| ||| || | || |||||||| | | | || ||||| ||||||| Sbjct 41428 TTTAACTTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAA 41487 Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 |||||||||||| ||||| | || | |||| | || ||||| ||| |||| ||| Sbjct 41488 ATAGTACATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTT 41547 Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203 |||| | || || |||| ||| ||||| | || ||||| ||||| || || ||||| Sbjct 41548 TCCATAATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCC 41607 Query 62204 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AA 62262 || ||||||||||||| ||| | || || || ||||||||||| || || || || Sbjct 41608 TCTATCTGCAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAA 41667 Query 62263 CTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTACCATAA 62319 || ||| || | || ||||| ||| |||| || || |||||| | || | Sbjct 41668 GTCCCTT-ATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTA 41726 Query 62320 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62379 || ||| || || || |||| |||||| | | ||||||| || | | |||||| Sbjct 41727 TCAAATTTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGAT 41786 Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 ||||||| ||||| || || ||||| ||||| | || |||||| || ||| | | Sbjct 41787 GGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATG 41846 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 |||| | || ||||||||||| | || || || || || ||||| ||||| || || | Sbjct 41847 GTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTA 41906 Query 62500 CCAATAAACTATTTCTAAGACCGTATGTTCTG-ATTTTATCTTTTA--GATGTTCCCAAT 62556 ||| | ||| | |||||| ||| | || | ||| ||||||| | || ||||| Sbjct 41907 ACAAAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTCTTTTAAGGCAGT--CCAAT 41962 Query 62557 TCCAAAGATCCGACG-------GTACAACANNNNNNNNNNNATATTGTAGAATACCGTTA 62609 ||| ||||| | | || | ||| |||||||| ||| || | | Sbjct 41963 CCCACAGATCAGTAGGAGTCTTGTCCCACA-------TGTCATATTGTAAAATGCCTTGA 42015 Query 62610 CTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACT 62668 || || | || ||| |||| || || ||||||||||| || | || |||||| Sbjct 42016 CTTGCAGGAC-TTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACT 42074 Query 62669 CGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTC 62728 || ||||| || || || || || |||||||| || | | ||| || |||||| Sbjct 42075 AGCTTCTAAAGCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTC 42134 Query 62729 CGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAAT 62788 || ||| | ||| | | | | | ||| || || |||||||| |||||||| || Sbjct 42135 TTCACTCTCATAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGAT 42194 Query 62789 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 62848 || ||||| |||||| || |||| || | | |||||||| | ||||| | |||| Sbjct 42195 GCCAATAGGCCTATGTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAAC 42254 Query 62849 ATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA-CCACATCCTTCAGTTTGAGAA 62907 ||| ||||| ||||| | |||| || | | ||| | || | || | ||| ||| Sbjct 42255 ATCAATAATCTTATTTAAATTT-TGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAA 42313 Query 62908 AATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 ||| ||| || | |||||||| || | || | || || | ||| ||||| | Sbjct 42314 AATTAAAAGTTTTATTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTG 42373 Query 62968 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 63027 | || |||| || | ||| | | || || |||||||| || || || || |||| Sbjct 42374 CCACTTCATCAGGTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAG 42433 Query 63028 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63087 | || | ||||| ||||||||| ||| |||| || | ||| ||||| | || |||| | Sbjct 42434 TGCCAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTG 42493 Query 63088 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG 63147 | || ||||||| || | |||||| || |||||||| | || | || | | | Sbjct 42494 TTCCTGTTTCAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAA--CTTG 42551 Query 63148 ATTTGTATCTCCTTTCTCT--TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCA 63205 ||| || | ||| ||| ||| || ||| || ||| || || || ||||| Sbjct 42552 TTTTACATAGCGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCA 42611 Query 63206 AACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63265 | || |||||| ||| || | | |||||||| | ||| | | | | | | Sbjct 42612 ACAATCAGCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTC 42671 Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTAT 63324 || ||||||||||| | ||| || ||||| | ||| ||| |||| ||||||| || Sbjct 42672 TACCCGTTTCATAAACAAATCTGGTATCCATAAAGC-ATAGAATAATTCTCTTGCTCGTA 42730 Query 63325 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63384 ||| || || || ||||||||||| | ||| | || | | | ||| | ||||| | Sbjct 42731 CTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAG 42790 Query 63385 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63444 ||||||| || | || | ||||||| |||||||| || || ||||| | ||||| | Sbjct 42791 GTTCCAAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGG 42850 Query 63445 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63504 | ||||||||||| ||||| ||||| |||| || ||| || || || ||||| ||||| | Sbjct 42851 CAGTGTTATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAG 42910 Query 63505 AGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCAT 63562 ||||| ||| | || | || | | | | ||| | ||| || || || || Sbjct 42911 CAATATAAGTTCCTTTAGCTCTTATGCAATGC-ACATGA-ACACCGATACCTCCAGCTGA 42968 Query 63563 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGAT 63622 || || |||||||| ||| |||||| || ||||| || ||||| || || ||||| | Sbjct 42969 CTTGGAAATTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTT 43028 Query 63623 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGT 63682 ||| | || ||||| ||||| ||| | | | ||| | ||| ||| | || Sbjct 43029 CATAGCTACAAGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGT 43088 Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63742 || || || ||||| |||||||||| | | |||||| || | ||||||| || Sbjct 43089 TGGGCTTGCATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATC 43148 Query 63743 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 |||||| || || || || || |||||||| | ||| ||||| |||| ||| Sbjct 43149 TATATCTTCCCCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTC 43205 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 64017 TTTTTTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 ||||| ||||| || |||| ||||||||| |||| ||| || ||||||||| |||| || Sbjct 44462 TTTTTGGTTTCTTTATGTAAATTTGATATTGCTAATCTAGCAGCTAGAATGCCATAGTCT 44521 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | || || || ||||| |||| ||||||| | |||| ||| || ||| Sbjct 44522 GGATGATCAGTTGTCATTGTAGCTGCAGTTTCAGCTGCCAAGTTATCCAGTTCGACAGTT 44581 Query 64137 GTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTAT 64177 ||||||||| || || || ||||| |||| || ||| Sbjct 44582 GTTACTCCAGAGTAAATGCCACTTATAACTTTCAAAGTTAT 44622 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 |||||||||||||||||||| || ||| |||| | ||| || || |||||||| |||||| Sbjct 43750 TTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTAT 43809 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATA 63926 ||| || || || |||| ||| | || | ||| | || |||| ||| |||| ||| Sbjct 43810 TTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAACAATA 43869 Query 63927 T 63927 | Sbjct 43870 T 43870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629752563460080