Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq538 589 2e-163 seq1957 96.9 3e-15 >seq538 Length=46986 Score = 589 bits (652), Expect = 2e-163 Identities = 1208/1779 (68%), Gaps = 34/1779 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| |||| ||| | || | ||| || | | ||| |||||||||||| Sbjct 41444 TCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCAGTT 41503 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| |||| | || ||||| ||| || | |||| | || | || | | Sbjct 41504 TTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGGTTCA 41563 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || || | | ||| ||||| ||||| |||||||| ||||| || || |||||| Sbjct 41564 GCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGCCATT 41623 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || | | ||| || || |||||||| || || |||| | |||| || | | Sbjct 41624 TGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTTTTTT 41683 Query 37030 GGTAAATCT-----AAATGTTGAATAGAACCATTAT-GTAACACAATTGTATTCTTTATG 37083 || ||||| | || ||| ||||| ||||| | || | | || ||| || || Sbjct 41684 GG--AATCTTTTCAATATTTTGTATAGATCCATTGTTGTGA-ATTATCAAATTTTTCATA 41740 Query 37084 TCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 || | || ||| || || ||| ||| ||| | || || || | || ||||| | Sbjct 41741 TCTTCATCCCA--TAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGGTTAACAACTT 41798 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 |||| || ||||||||||| | | | || || || |||| ||||||||| || | Sbjct 41799 GAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAGATT 41858 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 ||||||| | | ||| || | ||| || ||||| |||||||| |||| | |||| || Sbjct 41859 CATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGGAAT 41918 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | | | ||||| | |||| | |||| || || |||||||||| | ||| || | Sbjct 41919 TACGAAGACCATGCTTTGCAATTTTTCTTTTAAGG-CAGTCCAATCCCACAGATCAGTAG 41977 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | |||| |||||| |||||||||| ||| |||| ||| || ||| | | ||| Sbjct 41978 GAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATCATAAC 42037 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | ||| || | | | || | ||| ||||||| ||||| || |||| |||| Sbjct 42038 TAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCATAGTATA 42097 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | ||||| || |||||| ||| | || |||||||||| || || | | | | | || Sbjct 42098 TAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGGAAATCTCA 42157 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| | ||| |||| || || |||||||||||||| || || || ||||||||| ||| Sbjct 42158 TTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTTCATAT 42217 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | || | | |||| ||||||||| | || | ||| || || ||||||| ||||| Sbjct 42218 TCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTTAAATTTT 42277 Query 37622 ---TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAA 37678 |||| ||| ||| |||| | | || || | || |||| ||||| | || Sbjct 42278 GTGTAAC-AGT--TTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTATTTTCAA 42334 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TA 37737 |||| || | | | || || ||| ||| || || || |||||||| || | || Sbjct 42335 CAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAG-GTGATGTA 42393 Query 37738 AATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 | | | ||| ||||| || || || || || | || || || | ||| ||||||| Sbjct 42394 TACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTTTTGATTA 42453 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 |||| | || |||||||||||||| | ||||| || |||||| ||| | ||| || Sbjct 42454 CTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAACTTGTGCT 42513 Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtt----tttttCTT 37913 || || || | |||||| ||| ||| ||| | | |||| | |||||||| Sbjct 42514 TCTATTATTGCTTTCCACAAAACCTGTGCACGAAC--TTGTTTTACATAGCGTTTTTCTT 42571 Query 37914 TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGG 37973 ||| || | | |||||| | ||| || | ||||| ||| ||||| || Sbjct 42572 G--TTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCCAGG 42629 Query 37974 ACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAA 38033 || | | |||||||| ||| ||| | ||||| ||||||||| |||| |||||| || Sbjct 42630 GCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGTTTCATAAACAA 42689 Query 38034 ATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATT 38093 ||| |||| |||||| ||| ||||| ||| | | || |||||| || || ||| Sbjct 42690 ATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACTTCTTCTTTACCAGTATT 42749 Query 38094 CTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 |||| |||| || ||| || || | ||| |||||||| ||||| | ||| | | | Sbjct 42750 CTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATACACTGCAAA 42809 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 |||||| || | ||| | ||| || |||| | |||||| | ||||||||||| | ||| Sbjct 42810 TGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTATTATAGACTCT 42869 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 ||||||||| || | |||||| || | || ||| |||| | |||||||| || ||||| Sbjct 42870 TAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAGTTCCTTTAGC 42929 Query 38274 TCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331 || ||| | | | || ||| || || || || || || || ||||| || ||| Sbjct 42930 TCTTATGCAATGCACATGAACA--CCGATACCTCCAGCTGACTTGGAAATTAATGCACAT 42987 Query 38332 TGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAA 38391 ||||||| |||||| |||| ||||| ||||||||||| || || | || | |||||| Sbjct 42988 TGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTACAAGGAAACAA 43047 Query 38392 CTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAAC 38451 ||||| |||||| |||||| | || ||| | ||| || |||||| | || Sbjct 43048 GAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGCATGAGTAAAA 43107 Query 38452 CATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATA 38511 ||||||| || || |||| || || | ||| | |||||||||| | ||||| || Sbjct 43108 TATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCTTCCCCGTGTATG 43167 Query 38512 CCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || | || || | ||| |||||||| || |||| |||| Sbjct 43168 CCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTCT 43206 >seq1957 Length=467265 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || ||||| ||||| ||| ||||| ||||| || | |||||||||||| || ||||| Sbjct 419069 TAAGTATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAAG 419010 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||| | || |||| ||| || || |||| | |||| | | ||| Sbjct 419009 CCATAGAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGGTTC 418950 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 ||||| || || ||||| | ||||| || |||| || ||| || || || | |||| Sbjct 418949 TCATTGACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGTTTT 418890 Query 12080 TCG 12082 ||| Sbjct 418889 TCG 418887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468476418957840