Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq538 511 6e-140 seq1957 100 4e-16 >seq538 Length=46986 Score = 511 bits (566), Expect = 6e-140 Identities = 1195/1790 (67%), Gaps = 26/1790 (1%) Strand=Plus/Plus Query 64817 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 64876 ||| | |||| ||| || | || |||||||| | | | || ||||| ||||||| Sbjct 41428 TTTAACTTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAA 41487 Query 64877 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 64936 |||||||||||| ||||| | || | |||| | || ||||| ||| |||| ||| Sbjct 41488 ATAGTACATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTT 41547 Query 64937 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 64996 |||| | || || |||| ||| ||||| | || ||||| ||||| || || ||||| Sbjct 41548 TCCATAATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCC 41607 Query 64997 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 65055 || ||||||||||||| ||| | || || || ||||||||||| || || || || Sbjct 41608 TCTATCTGCAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAA 41667 Query 65056 CTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTGCCATAA 65112 || ||| || | || ||||| ||| |||| || || |||||| | || | Sbjct 41668 GTCCCTT-ATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTA 41726 Query 65113 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 65172 || ||| || || || |||| |||||| | | ||||||| || | | |||||| Sbjct 41727 TCAAATTTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGAT 41786 Query 65173 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 65232 | ||||| |||||||| || ||||| ||||| | || |||||| || ||| | | Sbjct 41787 GGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATG 41846 Query 65233 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 |||| | ||| ||||||||||| | || || || || || ||||| ||||| || || | Sbjct 41847 GTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTA 41906 Query 65293 CCAATAAACTATTTCTAAGACCGTATGTTCTG-ATTTTATCTTTTAGAGGTTCCCAATTC 65351 ||| | ||| | |||||| ||| | || | ||| ||||||| | ||||| | Sbjct 41907 ACAAAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTCTTTTAAGGCAGTCCAATCC 41964 Query 65352 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTA 65410 || ||||| | || ||||| ||| || | ||| || | | Sbjct 41965 CACAGATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGA 42024 Query 65411 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 65470 | ||| |||| || ||| ||||||||||| || | ||||||||| || ||||| Sbjct 42025 C-TTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAA 42083 Query 65471 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 65530 || || || || || ||||| || || | | ||| || |||||| || || Sbjct 42084 AGCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTC 42143 Query 65531 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590 | | ||| | | | | | ||| || ||||||||||| |||||||| || || ||||| Sbjct 42144 ATAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGG 42203 Query 65591 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 65650 |||||| || |||| || | | |||||||| | ||||| | |||| ||| ||||| Sbjct 42204 CCTATGTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAAT 42263 Query 65651 TTTATTGAGATTTCTGACAATTACTTTGA-CCACATCCTTCAGTTTGAGAAAATCAAATC 65709 ||||| | |||| || | | ||| | || | || | ||| |||||| ||| Sbjct 42264 CTTATTTAAATTT-TGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAG 42322 Query 65710 GCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 | || | |||||||| || | || | || || | ||| || || || || |||| Sbjct 42323 TTTTATTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCAT 42382 Query 65770 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 65829 || | ||| | | || || |||||||| || || || || || || || | || Sbjct 42383 CAGGTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGAT 42442 Query 65830 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 65889 ||| ||||||||| ||| |||| || | ||| ||||| | || |||| || || |||| Sbjct 42443 TTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTT 42502 Query 65890 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC----CTTTATTATAGATTTG 65945 ||| || | |||||| || |||||||| | || | || || || || | Sbjct 42503 CAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACA---- 42558 Query 65946 TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 66005 || | |||||| ||| || | ||| || ||| || || || |||||| || Sbjct 42559 TAGCGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAATCA 42618 Query 66006 TCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 66065 |||||||||| || | | |||||||| | ||| | | | | | | || ||| Sbjct 42619 GCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGT 42678 Query 66066 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTC 66124 |||||||| | ||| || ||||| | ||| ||| ||||| ||||| | || ||| || Sbjct 42679 TTCATAAACAAATCTGGTATCCATAAAGC-ATAGAATAATTCTCTTGCTCGTACTTCTTC 42737 Query 66125 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAA 66184 || || ||||||||||| | ||| | || | | | ||| ||||| |||||||| Sbjct 42738 TTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAA 42797 Query 66185 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 66244 || | || | ||||||| |||||||| || || ||||| | ||||| || ||||| Sbjct 42798 ATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTT 42857 Query 66245 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 66304 |||||| ||||| ||||| |||| || ||||||||| | ||||| || || | ||||| Sbjct 42858 ATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATA 42917 Query 66305 GCTTCCACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362 |||| | || | || | | | | ||| | ||| || || || || || || Sbjct 42918 AGTTCCTTTAGCTCTTATGCAATGC-ACATGA-ACACCGATACCTCCAGCTGACTTGGAA 42975 Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 66422 |||||||| ||| |||||| |||||||| || || || ||||| ||||| |||| Sbjct 42976 ATTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCT 43035 Query 66423 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 66482 | || ||||| ||||| ||| | | ||| | ||| ||| | || || Sbjct 43036 ACAAGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTT 43095 Query 66483 GCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC 66542 || || ||||| |||||||||| | | |||||| || | ||||||| |||||||| Sbjct 43096 GCATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCT 43155 Query 66543 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 || || || || || |||||||| | ||| ||||| |||| ||| Sbjct 43156 TCCCCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTC 43205 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 ||||| |||||||| |||| |||||||| |||| |||||| |||| |||| |||| || Sbjct 44462 TTTTTGGTTTCTTTATGTAAATTTGATATTGCTAATCTAGCAGCTAGAATGCCATAGTCT 44521 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||| | || || || ||||| |||| ||||||| | |||| ||| || ||| Sbjct 44522 GGATGATCAGTTGTCATTGTAGCTGCAGTTTCAGCTGCCAAGTTATCCAGTTCGACAGTT 44581 Query 66930 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 66970 ||||||||| || || || ||||| |||| || ||| Sbjct 44582 GTTACTCCAGAGTAAATGCCACTTATAACTTTCAAAGTTAT 44622 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 ||||||||||||||||||||| || ||| |||| | ||| || || |||||||| ||||| Sbjct 43749 CTTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTA 43808 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 66715 | ||| || || || |||| ||| | |||| |||| | || |||| ||| |||| Sbjct 43809 TTTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAAC 43865 >seq1957 Length=467265 Score = 100 bits (110), Expect = 4e-16 Identities = 143/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | ||| ||||| || || | ||| || ||||| ||||| || ||||| |||| Sbjct 419604 AAAGTCAATCCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCA 419545 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || ||||| || ||||| ||||| ||||| || | || | || || || ||| | Sbjct 419544 GAGAAGAATATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTC 419485 Query 36329 T--CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | | || | |||| | |||||| || |||||||| |||||||| || | |||||| Sbjct 419484 TTGCTTGCAATCCATTGCATAGCCCAGTCAGCCTTCTTCTTTACACAGGGTAATGTCTCA 419425 Query 36386 ATAGCATTAAAGAGATAGT 36404 ||||||||||| | | ||| Sbjct 419424 ATAGCATTAAACAAAAAGT 419406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658104835431240