Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq566 203 3e-47 seq5066 109 5e-19 >seq566 Length=99533 Score = 203 bits (224), Expect = 3e-47 Identities = 345/495 (70%), Gaps = 4/495 (1%) Strand=Plus/Minus Query 20806 GGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAGAATTTC 20865 ||||| ||||| || || || || ||||||||||||||||| || ||||| || |||||| Sbjct 70768 GGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTC 70709 Query 20866 CACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGTTTGGCGCACGATCTTGTCGTG 20924 || |||| || |||||| ||| || || | || || | | | | ||||||| Sbjct 70708 CAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTT-CTCTTGGTCTTGTCAGT 70650 Query 20925 CATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTTGAGATG 20984 | | ||| || || || | | |||||| || || ||||| || | | || || | Sbjct 70649 AAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTC 70590 Query 20985 CGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 21044 || |||| |||| | ||| ||||| || |||||||||||||| ||||| ||||| Sbjct 70589 AGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCA 70530 Query 21045 TGCGCTGACACCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACCTT 21104 | | ||||||||| |||||||||| ||| ||||| ||||||||||| | || || Sbjct 70529 AGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTT 70470 Query 21105 AAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGA-CACTTT 21163 |||||| | || || ||| |||||||| | |||| |||||| || || | || Sbjct 70469 AAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTT 70410 Query 21164 TGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATGCG 21223 | | | ||||| ||||| || || || || || || | ||||| |||| | || | Sbjct 70409 TAAAC-TGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAG 70351 Query 21224 ACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACCCCATTCGA 21283 | || || | || || ||||||||| |||| | ||| || || |||||||| | Sbjct 70350 TTAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCA 70291 Query 21284 CAAAGTATGCTCCAA 21298 |||| || || |||| Sbjct 70290 CAAAATAAGCGCCAA 70276 >seq5066 Length=19128 Score = 109 bits (120), Expect = 5e-19 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625 ||||| ||||||||||||||||||||| | || |||| ||||| ||||| || | Sbjct 18819 GTAGATTCTTTTTGAATGTTATAATCGGATAAGGT--TCGACCATCTTCAAGCTGCTTTC 18762 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 ||||| | |||| |||||||||||| || || |||||||||||||| ||| | || | | Sbjct 18761 CAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTC-TTGAATCTTCGCT 18703 Query 139686 TTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 ||| | | ||| | || |||| || || || || | || | ||||| || || | Sbjct 18702 TTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTACCCGTGAGA 18643 Query 139745 GTTTTTACGAATATTTGCAT 139764 || || ||||| || ||||| Sbjct 18642 GTCTTCACGAAAATCTGCAT 18623 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| |||||||| |||||||| ||||| || | Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTC--TG 19020 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || ||| ||| |||||| || || || |||||| |||||| ||| || ||||| || | Sbjct 19019 ATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGG 18960 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | |||||||||||||| ||| | |||| ||| | | || | || || | || || Sbjct 18959 GAATGCCTTCTTTGTC-TTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCA 18901 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | || || || || | ||||| ||||| || ||||| Sbjct 18900 ACTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496012775191200