Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq538 581 5e-161 seq1957 118 2e-21 >seq538 Length=46986 Score = 581 bits (644), Expect = 5e-161 Identities = 1216/1793 (68%), Gaps = 29/1793 (2%) Strand=Plus/Plus Query 78695 GCTTTATCTT-ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGT 78753 |||||| ||| | ||| || | || |||||||| | | | || ||||| |||||| Sbjct 41426 GCTTTAACTTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGT 41485 Query 78754 AGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGT 78813 | |||||||||||| ||||| | || | |||| | |||||||| ||| |||| | Sbjct 41486 AAATAGTACATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAAT 41545 Query 78814 TTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCT 78873 || |||| | || || |||| ||| ||||| | || ||||| ||||| || || ||| Sbjct 41546 TTTCCATAATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCT 41605 Query 78874 CCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA- 78932 || || ||||||||||||| ||| | || || || ||||||||||| || || || Sbjct 41606 CCTCTATCTGCAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTAT 41665 Query 78933 AACTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTGCCAT 78989 || || ||| || | || ||||| ||| |||| || || |||||| | || Sbjct 41666 AAGTCCCTT-ATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAAT 41724 Query 78990 AATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 79049 ||| ||| || || ||||||| |||||| | | ||||||| || | | |||||| Sbjct 41725 TATCAAATTTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATG 41784 Query 79050 CGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATA 79109 | ||||| |||||||| || ||||| ||||| | || |||||| || ||| | Sbjct 41785 ATGGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAA 41844 Query 79110 TGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 |||||| | |||||||||||||| | || || || || || || |||||||| || || Sbjct 41845 TGGTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGC 41904 Query 79170 CACCAATAAACTATTTCTAAGACCGTATGATCTG-ATTTTATCTTTTAGAGATTCCCAAT 79228 | ||| | ||| | |||||| ||| | || | ||| ||||||| | ||||| Sbjct 41905 TAACAAAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTCTTTTAAGGCAGTCCAAT 41962 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGT 79288 |||| ||||||| || | ||| | |||||||||| ||| || | ||| || Sbjct 41963 CCCACAGATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGC-- 42020 Query 79289 ATGA--TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTC 79346 | || ||| || | ||| |||||||| || || ||||||||||| || || Sbjct 42021 AGGACTTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTC 42080 Query 79347 TAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCT 79406 ||| ||||| || || || ||||| || || | | ||| || ||||||| || Sbjct 42081 TAAAGCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACT 42140 Query 79407 ATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 ||| | ||| | | | | | ||| || ||||||||||| |||||||| || || || Sbjct 42141 CTCATAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAAT 42200 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 79526 ||| |||||| || |||| ||| | | |||||||| | ||||| | |||| ||| || Sbjct 42201 AGGCCTATGTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAAT 42260 Query 79527 AATTTTATTGAGATTCCTGACTATTACTTTGA-CCACATCCTTTAGTTTGAGAAAATCAA 79585 ||| ||||| | ||| || || | ||| | || | |||| ||| |||||| || Sbjct 42261 AATCTTATTTAAATT-TTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAA 42319 Query 79586 ATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCT 79645 | | || | |||||||| || | || | || || | ||| || || || || | Sbjct 42320 AAGTTTTATTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTT 42379 Query 79646 CATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTA 79705 ||| || | ||| | | ||||| ||||| ||||| || || || || || || | Sbjct 42380 CATCAGGTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAA 42439 Query 79706 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAG 79765 ||||| ||||||||| ||| |||| || | ||| ||||| | || | || || || | Sbjct 42440 GATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTG 42499 Query 79766 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC----CTTTATTATAGAC 79821 |||||| || | |||||| || |||||||| | || | || || || || | Sbjct 42500 TTTCAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACA- 42558 Query 79822 TTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACA 79881 || | |||||| ||| || | | |||||| ||| || || || |||||| | Sbjct 42559 ---TAGCGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAA 42615 Query 79882 TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACT 79941 || | |||||||| || | || ||||||||| | ||| | | ||| | | ||| Sbjct 42616 TCAGCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACC 42675 Query 79942 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTC 80000 ||||||||||| | ||| || ||||| | ||| ||| |||| ||||| | || || Sbjct 42676 CGTTTCATAAACAAATCTGGTATCCATAAAGC-ATAGAATAATTCTCTTGCTCGTACTTC 42734 Query 80001 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 80060 || || || ||||||||||| | ||| | || | | | ||| | ||||| ||||| Sbjct 42735 TTCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTC 42794 Query 80061 CAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 80120 ||| || | || | |||| || |||||||| || || ||||| | ||||| || || Sbjct 42795 CAAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGT 42854 Query 80121 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 80180 ||||||||| ||||| ||||| |||| || ||||||||| | ||||| || || | || Sbjct 42855 GTTATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAAT 42914 Query 80181 ATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 80238 ||| |||| | || | || | | | | ||| | ||| || || || || || Sbjct 42915 ATAAGTTCCTTTAGCTCTTATGCAATGC-ACATGA-ACACCGATACCTCCAGCTGACTTG 42972 Query 80239 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298 || |||||||| ||| |||||| |||||||| || || || || || ||||| |||| Sbjct 42973 GAAATTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATA 43032 Query 80299 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 80358 | || ||||| ||||| ||| | | ||| | ||| ||| | || || Sbjct 43033 GCTACAAGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGG 43092 Query 80359 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 80418 || || ||||| |||||||||| | | |||||| || | ||||||| |||||| Sbjct 43093 CTTGCATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATA 43152 Query 80419 TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || || || || || || |||||||| | ||| ||||| |||| ||| Sbjct 43153 TCTTCCCCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTC 43205 Score = 96.9 bits (106), Expect = 5e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 80689 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 ||||| ||||| || |||| |||||||| |||| ||| || |||| |||| |||| ||| Sbjct 44462 TTTTTGGTTTCTTTATGTAAATTTGATATTGCTAATCTAGCAGCTAGAATGCCATAGTCT 44521 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 ||||| | || || || ||||| |||| ||||||| | |||| ||| || ||| Sbjct 44522 GGATGATCAGTTGTCATTGTAGCTGCAGTTTCAGCTGCCAAGTTATCCAGTTCGACAGTT 44581 Query 80809 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 80849 ||||||||| || || || ||||| |||| || ||| Sbjct 44582 GTTACTCCAGAGTAAATGCCACTTATAACTTTCAAAGTTAT 44622 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 80478 CTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 |||||| |||||||||||||| || ||| |||| | ||| || || |||||||| ||||| Sbjct 43749 CTTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTA 43808 Query 80538 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 80594 | ||| || || || |||| ||| | |||| |||| | || |||| ||| |||| Sbjct 43809 TTTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAAC 43865 >seq1957 Length=467265 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 |||||||| || || | | ||||| || || || | ||||| || || |||||||| Sbjct 419069 TAAGTATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAAG 419010 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || |||||||| ||||| || || | |||||||||| |||| ||||| | | || Sbjct 419009 CCATAGAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGGTTC 418950 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 ||||| ||||| || || || ||||| ||||| |||||||| || || ||||||||| Sbjct 418949 TCATTGACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGTTTT 418890 Query 50410 TCG 50412 ||| Sbjct 418889 TCG 418887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718194629768040