Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1957 111 2e-19 >seq1957 Length=467265 Score = 111 bits (122), Expect = 2e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 ||||||| || ||| || || || ||||| || ||||||||||| | ||| | || Sbjct 419633 CCTCATCCCTTGAAATCAGCTCATTGCTGAAA--GTCAATCCTGGCATAAGTCCCCTCTT 419576 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | ||| ||||||| ||||| || || |||||||| || |||||||||||||| Sbjct 419575 CTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAA 419516 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 |||| | ||||| || || | ||| | ||| | | ||||||| ||||||| || Sbjct 419515 AGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTC 419456 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 || || || || | | | | ||| |||||||||||||| ||| | ||| Sbjct 419455 AGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAACAAAAAGTCC 419404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 ||||||| || ||| || || || ||||| || ||||||||||| | ||| | || Sbjct 418613 CCTCATCCCTTGAAATCAGCTCATTGCTGAAA--GTCAATCCTGGCATAAGTCCCCTCTT 418670 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | ||| ||||||| ||||| || || |||||||| || |||||||||||||| Sbjct 418671 CTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAA 418730 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 |||| | ||||| || || | ||| | ||| | | ||||||| ||||||| || Sbjct 418731 AGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTC 418790 Query 14072 AG 14073 || Sbjct 418791 AG 418792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| |||||||| | || ||||| || ||||||| ||||||||||| |||||| Sbjct 419072 ATGTAAGTATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGA 419013 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261 || ||||| || || |||||||| | | || ||||| |||| | ||| | | Sbjct 419012 AAGCCATAGAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGG 418953 Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14317 || ||||| ||||| ||||| || ||||| || || |||| | ||||| || Sbjct 418952 TTCTCATTGACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAA 418897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479678462087400