Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1957 100 3e-16 >seq1957 Length=467265 Score = 100 bits (110), Expect = 3e-16 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||| || ||| || || || ||||| || ||||||||||| | ||| | || Sbjct 419633 CCTCATCCCTTGAAATCAGCTCATTGCTGAAA--GTCAATCCTGGCATAAGTCCCCTCTT 419576 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | ||| ||||||| || || ||| || |||||||| || |||||||||||||| Sbjct 419575 CTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAA 419516 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 |||| | ||||| || || | ||| | ||| ||| ||||||| ||||||| || Sbjct 419515 AGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTC 419456 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || || || || | | | | ||| || || ||||| || ||| Sbjct 419455 AGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAACAAA 419410 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||| || ||| || || || ||||| || ||||||||||| | ||| | || Sbjct 418613 CCTCATCCCTTGAAATCAGCTCATTGCTGAAA--GTCAATCCTGGCATAAGTCCCCTCTT 418670 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | ||| ||||||| || || ||| || |||||||| || |||||||||||||| Sbjct 418671 CTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAA 418730 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 |||| | ||||| || || | ||| | ||| ||| ||||||| ||||||| || Sbjct 418731 AGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTC 418790 Query 13860 AG 13861 || Sbjct 418791 AG 418792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478539379724040