Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq538 522 4e-143 >seq538 Length=46986 Score = 522 bits (578), Expect = 4e-143 Identities = 1179/1764 (67%), Gaps = 18/1764 (1%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 ||||| ||||| | | | || | ||| ||||||| ||||||||| || ||||| | Sbjct 41450 GTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCAGTTTTCAAT 41509 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | |||| | || ||||| ||| |||| ||| ||| | || || |||| Sbjct 41510 CCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGGTTCAGCTACA 41569 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 |||||||| | |||||||| ||||| || || ||||| || ||||||||||||| ||| Sbjct 41570 TGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGCCATTTGTATA 41629 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 71039 | || || || ||||||||||| || || || || || |||| | | || ||||| Sbjct 41630 GTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTTTTT-TGGAAT 41688 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| |||| || || |||||| | ||| ||| |||||| || ||||||| Sbjct 41689 CTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTTTCATATCTTCATC 41748 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 |||||| | | ||||||| || | | ||||||| | ||||| |||||||| || || Sbjct 41749 CCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGGTTAACAACTTGAAACTCACC 41808 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 ||| ||||| | || |||||| || ||| | ||||| | || ||||||||||| Sbjct 41809 AGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAGATTCATTATTTCC 41868 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | || || || || || ||||| ||||| || || | ||| || ||| | |||||| Sbjct 41869 AAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGGAATTACGAAGACC 41928 Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 ||| | ||||| ||||||| | ||||| ||| ||||| | || Sbjct 41929 ATGCTTTGCAATTTT-TCTTTTAAGGCAGTCCAATCCCACAGATCAGTAGGAGTCTTGTC 41987 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA--TCCTGCATATGTATCGTAT 71394 ||||| | ||| || | || ||| |||| || ||| Sbjct 41988 CCACATGTCATATTGTAAAATGCCTTGACTTGC--AGGACTTCCATCATAACTAGAGTAA 42045 Query 71395 GGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCG 71454 ||||| || || || | ||||||||| || ||||| |||||||| || || ||||| Sbjct 42046 ACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCATAGTATATAGTTTCA 42105 Query 71455 AAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATA 71514 || || | | ||| || |||||| || ||| | ||| | | | | | | Sbjct 42106 AATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGGAAATCTCATTAACACA 42165 Query 71515 AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATT 71574 || || ||||||||||| ||||| || || || ||||| || ||| || |||| ||| | Sbjct 42166 AATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTTCATATTCGAATTC 42225 Query 71575 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATT 71634 | |||||||| | ||||| | |||| ||| ||||| ||||| | |||| || || Sbjct 42226 TTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTTAAATTT-TGTGTAAC 42284 Query 71635 ACTTTGACCA-CATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAAACACGTT 71693 | ||| | | | | |||| ||| |||||| ||| | || | ||||||| || Sbjct 42285 AGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTATTTTCAACAAACATATT 42344 Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 | || | || || | ||| || || || || |||| || | ||| | | ||| Sbjct 42345 AACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAGGTGATGTATACTCAACAAT 42404 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 ||| |||||||| || || || || || || || | ||||| ||||||||| ||| |||| Sbjct 42405 TTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTTTTGATTACTTTTTCTGTT 42464 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || | ||| ||||| | ||| | || || || ||||||| || | |||||| || || Sbjct 42465 GCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAACTTGTGCTTCTATTATTGC 42524 Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGT 71933 |||||| | || | || | | || || | |||||| ||| || | | Sbjct 42525 TTTCCACAAAACCTGTGCACGAACTTGTTTTACATAGCGTTTTTCTTGTTCATACTTTTC 42584 Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 |||||| ||| || || || |||||| || | |||||||| || | | ||||| Sbjct 42585 ATATAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCCAGGGCAGTTGTGAGGACA 42644 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||| | ||| | | ||| | | ||| ||||||||||| | ||| || ||||| | Sbjct 42645 CATAAGACTCCAATTTTCATTTTTTTCTACCCGTTTCATAAACAAATCTGGTATCCATAA 42704 Query 72054 AGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 72112 ||| ||| |||| ||||| | || || || || || ||||||||||| | ||| | Sbjct 42705 AGC-ATAGAATAATTCTCTTGCTCGTACTTCTTCTTTACCAGTATTCTTTTTTAAATCTA 42763 Query 72113 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTT 72172 || | | | ||| | ||||| |||||||| || | || | |||| || |||| Sbjct 42764 AAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATACACTGCAAATGCTCCAGGGCGTT 42823 Query 72173 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 72232 |||| || || ||||| | ||||| || ||||||||||| ||||| ||||| |||| || Sbjct 42824 TGTTACCCCCTTGATCCACATATCTGGCAGTGTTATTATAGACTCTTAACATAGGAACAA 42883 Query 72233 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCT 72290 ||||||||| ||||| || || | ||||| |||| | || | || | ||| Sbjct 42884 GACCATTGGAAATCCCATTTGTACCAGCAATATAAGTTCCTTTAGCTCTTATGCAATGC- 42942 Query 72291 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 72350 | ||| | ||| || || || || || || |||||||| ||| |||||| ||||| Sbjct 42943 ACATGA-ACACCGATACCTCCAGCTGACTTGGAAATTAATGCACATTGTTTTAGTGTATC 43001 Query 72351 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 72410 ||| || || || ||||| ||||| |||| | || ||||| ||||| ||| | Sbjct 43002 ATATATTCCTTCGATACTGTCATCTTTCATAGCTACAAGGAAACAAGAAGACAATTGAGG 43061 Query 72411 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 72470 | ||| | ||| ||| | || || || || ||||| |||||||||| | Sbjct 43062 TCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGCATGAGTAAAATATTTTTCAGATAA 43121 Query 72471 TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACG 72530 | |||||| || | ||||||| |||||||| ||||| || || || ||||| Sbjct 43122 CAAATTGTAAGTGTTTATAGCTGCATCTATATCTTCCCCGTGTATGCCAACAGCAACACG 43181 Query 72531 CATTAACATATGCTGAGGTCTTTC 72554 ||| | ||||||||| |||| ||| Sbjct 43182 CATCAGCATATGCTGGGGTCGTTC 43205 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 72772 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 ||||| ||||| || |||| |||||||| |||| ||| || ||||||||| |||| ||| Sbjct 44462 TTTTTGGTTTCTTTATGTAAATTTGATATTGCTAATCTAGCAGCTAGAATGCCATAGTCT 44521 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||| | || || || ||||| |||| ||||||| | |||| ||| || ||| Sbjct 44522 GGATGATCAGTTGTCATTGTAGCTGCAGTTTCAGCTGCCAAGTTATCCAGTTCGACAGTT 44581 Query 72892 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 72932 ||||||||| || || || ||||| |||| || ||| Sbjct 44582 GTTACTCCAGAGTAAATGCCACTTATAACTTTCAAAGTTAT 44622 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 |||||| |||||||||||||| || ||| |||| | ||| || || |||||||| ||||| Sbjct 43749 CTTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTA 43808 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTAT 72680 | ||| || || || |||| ||| | || | |||| | || |||| ||| |||| || Sbjct 43809 TTTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAACAAT 43868 Query 72681 AT 72682 || Sbjct 43869 AT 43870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671069896488360