Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq566 190 2e-43 seq538 134 1e-26 seq5066 107 2e-18 >seq566 Length=99533 Score = 190 bits (210), Expect = 2e-43 Identities = 339/492 (69%), Gaps = 2/492 (0%) Strand=Plus/Minus Query 19411 GGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCGAAGAATTTC 19470 ||||| ||||| || || || || ||||||||||| || || || |||||||| |||||| Sbjct 70768 GGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTC 70709 Query 19471 CACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGTCTGCCGTACGCTCTTGTCGTG 19529 || |||| || |||||| ||| || || | || || | | | | ||||||| Sbjct 70708 CAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGG-TCTTGTCAGT 70650 Query 19530 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19589 | | | | || || || | | |||||| || || || ||||| || | || || | Sbjct 70649 AAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTC 70590 Query 19590 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19649 ||| |||| ||| || ||| ||||| || |||||||||||||| ||||| ||||| Sbjct 70589 AGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCA 70530 Query 19650 TGCGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTTT 19709 | | |||||| || |||||||||| ||| ||||| ||||||||||| | ||||| Sbjct 70529 AGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTT 70470 Query 19710 GAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTTT 19769 ||||| | ||||| || |||||||| | |||| |||||| || || || Sbjct 70469 AAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTT 70410 Query 19770 GAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCGA 19829 | || || ||||| || ||||| || || || | ||||| |||| | || | Sbjct 70409 TAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGT 70350 Query 19830 CAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGAC 19889 | || || | || || ||||||||| |||| | ||| || || |||||||| || Sbjct 70349 TAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCAC 70290 Query 19890 AAAGTATGCACC 19901 ||| || || || Sbjct 70289 AAAATAAGCGCC 70278 >seq538 Length=46986 Score = 134 bits (148), Expect = 1e-26 Identities = 309/463 (67%), Gaps = 2/463 (0%) Strand=Plus/Plus Query 156766 TGCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATT 156825 ||||| ||| |||| || || | || ||| || | ||||||| ||||||| ||| Sbjct 42060 TGCCAATTCACAACTAGCTTCTAAAGCTCCATAGTATATAGTTTCAAATATTTGTTGATT 42119 Query 156826 CAATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAA 156885 | || || || | || ||| | || || | | || | ||||||||||| || || Sbjct 42120 AAGTAAAATTGCTTCTTCACTCTCATAGGGAAATCTCATTAACACAAATGCATCTGCTAA 42179 Query 156886 ACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAAT 156945 || |||| || ||||| || || | ||| |||||| || || ||||| | | Sbjct 42180 TCCCTGAACACCGATGCCAATAGGCCTATGTTTCATATTCGAATTCTTTGCTTCTGGCAC 42239 Query 156946 AGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGT 157005 || ||||| || ||||||||| ||||| ||| | | ||| |||| | | | Sbjct 42240 TGGATAGAAGTTAACATCAATAATCTTATTTAAATTTTGTGTAACA-GTTTTAGTAACCT 42298 Query 157006 GTGC-AATAGTTGAAAATCAAAAGTATCATTATTGATATATTTATTGACGGCAATCGACG 157064 || ||| |||||||| |||||| | ||| | | | | |||| || || || |||| Sbjct 42299 GTTTTAATTTTTGAAAATTAAAAGTTTTATTTTCAACAAACATATTAACAGCTATGGACG 42358 Query 157065 CTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAAT 157124 ||| ||| || || || ||| || || | ||| | || ||||| | || | | Sbjct 42359 CTAAATTGCACACTGCCACTTCATCAGGTGATGTATACTCAACAATTTCTGTGCAAAGGT 42418 Query 157125 TGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGT 157184 ||||||||||||| || ||| ||||||| ||||| | |||||||| || || | Sbjct 42419 TGCTGCATTTTATAGTGCCAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTAT 42478 Query 157185 ATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGAT 157227 | ||||| || ||||| || ||||| |||| |||||| || Sbjct 42479 ACAACATATATGGTGTTCCTGTTTCAACTTGTGCTTCTATTAT 42521 >seq5066 Length=19128 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCT 143032 ||| | ||| | |||||||||||||| ||||| |||||| | || |||| ||| Sbjct 18832 AACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGT--TCGACCATCT 18775 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || || || || |||||| | |||| |||||||||||| || || |||||||||||||| Sbjct 18774 TCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCT 18715 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 ||| || ||| | | ||| | || || | ||||| ||||| | ||| | ||| Sbjct 18714 TGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTC 18655 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | || || ||||| || ||||| Sbjct 18654 TTACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Score = 105 bits (116), Expect = 7e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| |||||| || ||||| || || || || | Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTC--TG 19020 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || ||| ||| |||||| ||||| || |||||| |||||| ||| || ||||| || | Sbjct 19019 ATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGG 18960 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| ||| ||| | | || | || |||| ||||| | Sbjct 18959 GAATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAA 18900 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | || || || || | ||||| ||||| || ||||| Sbjct 18899 CTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506962044425520