Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1988 165 1e-35 seq143 150 3e-31 seq538 107 3e-18 seq563 86.0 9e-12 >seq1988 Length=441106 Score = 165 bits (182), Expect = 1e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 ||||| | ||||| ||||| |||||||||| |||| |||| | ||| | | ||||| Sbjct 379824 AATCCCAGTGATAGAAGGATGTTAATGTGCTCCTGGATTCCTTCTGATCTAGGCAAAATG 379883 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGC 70312 ||||| ||||| |||||||| || || |||||| | | | | || |||||||| ||| Sbjct 379884 GCACTTCCACCATGTCACTGCTTAGCACAGTTTCATGTGGCCAAGGGAAAATTGTCCTGC 379943 Query 70313 TTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTAT 70372 || |||| || || ||||| || |||||| | ||||| ||||||||||||||||| ||| Sbjct 379944 CTATTGTACCAAAGAAGTGCTGATATGGGCTTGGGTGTTCCCTTTAACATTGCAAGTTAT 380003 Query 70373 TCTATGTTGACGCACATGATTGCTCA 70398 || | ||||| ||||||||||| || Sbjct 380004 GCTTTATTGACACACATGATTGCACA 380029 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 70421 GAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAG 70480 |||||| | ||||| | ||| || |||| ||||| | || || || || || || || Sbjct 380699 GAGTTCATTCACACTACTGGGGATACTCATGTGTACCTTAACCATATTGAACCCTTGAAA 380758 Query 70481 GTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAA 70540 || || ||| | ||||| ||||||||||| | | || ||||| || |||||||| Sbjct 380759 AAACAGCTGGAAAGAGAGCCAAGACCTTTTCCAACATTAGAATTTGCACGCAAAGTTGAG 380818 Query 70541 AATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAG 70600 ||||| || |||||| || ||||||||||| || |||| || | || | || ||| Sbjct 380819 AATATAGATGATTTTAAATATGAAGATTTTATCATCAAAGACTATAAGCCTCATCCAAAG 380878 Query 70601 ATT 70603 ||| Sbjct 380879 ATT 380881 >seq143 Length=316367 Score = 150 bits (166), Expect = 3e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126747 ACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTT 126806 ||| |||| |||||||| || |||| |||||||||||||| || || ||||| ||||| Sbjct 216614 ACCCAGTCGTATGCCGCTGGGGTTGAGGGCGCTCTTGTCTCCTGGCACAGTGTTCTTGTT 216555 Query 126807 GCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACACT 126866 ||||||||| ||| || || || ||||| || || ||||||| ||| |||||||| Sbjct 216554 GCAAGCGATACTGACAAGCTCCAGTATGCGTTCAGCACGTGCTCCACTGAGGCCCACACT 216495 Query 126867 GCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTCG 126926 ||| | |||||||| || ||||| || || |||||||| || | | | |||||||||| Sbjct 216494 GCGGACGTCCACTAGGATGAGATGTACGTCCGTACCGCCCGTAGCCAGGTTGTAGCCTCG 216435 Query 126927 TGAAACGAGTCCCTCTGCCAA 126947 || | || || || ||||| Sbjct 216434 GGACATTAGACCATCGGCCAA 216414 >seq538 Length=46986 Score = 107 bits (118), Expect = 3e-18 Identities = 350/541 (65%), Gaps = 2/541 (0%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 ||||| || | ||| ||| || || || ||| | ||| | || ||| || || || | Sbjct 42905 ACAAATGGGATTTCCAATGGTCTTGTTCCTATGTTAAGAGTCTATAATAACACTGCCA-G 42847 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||| || || || || || ||||| || || || | || || || ||||||||||| Sbjct 42846 ATATGTGGATCAAGGGGGTAACAAACGCCCTGGAGCATTTGCAGTGTATTTGGAACCTTG 42787 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || ||||| ||| | || | || || |||| ||||| | ||| Sbjct 42786 GCACGCAGATGTCTTTGAATTTTTAGATTTAAAAAAGAATACTGGTAAAGAAGAAGTACG 42727 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 ||| || || || || ||||| | ||| | ||||||||||| ||||| || || | | Sbjct 42726 AGCAAGAGAATTATTCTATGCTTTATGGATACCAGATTTGTTTATGAAACGGGTAGAAAA 42667 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 || | ||||| || ||||| || || | || || || | ||||| ||||| Sbjct 42666 AAATGAAAATTGGAGTCTTATGTGTCCTCACAACTGCCCTGGATTGGCTGATTGTTGGGG 42607 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGT 97165 ||||| ||||| || || || || ||||| || || || | || ||| Sbjct 42606 TGAAGAATTTGAAGCTTTATATGAAAAGTATGAACAAGAAAAACGCTATGTAAAACAAGT 42547 Query 97166 CGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 ||||| | ||||||| || || | || || || || || ||||| || || Sbjct 42546 TCGTGCACAGGTTTTGTGGAAAGCAATAATAGAAGCACAAGTTGAAACAGGAACACCATA 42487 Query 97226 CATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAA 97285 || | || || ||| | || | || || || ||| | | ||||| || || Sbjct 42486 TATGTTGTATAAAGATTCTTGCAACAGAAAAAGTAATCAAAAAAATCTTGGCACTATAAA 42427 Query 97286 GGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 || ||| || ||||| |||||||| ||||| | || || || || |||||| || Sbjct 42426 ATGCAGCAACCTTTGCACAGAAATTGTTGAGTATACATCACCTGATGAAGTGGCAGTGTG 42367 Query 97346 C 97346 | Sbjct 42366 C 42366 >seq563 Length=33254 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 50926 AGGCGTAGCCTATGCCTTTCTGTCGGTGATGGAGAATGCCGTTGGAATGTTTGCTGCGGT 50985 |||||| || | ||| || | ||||| ||||||||||| || | |||||| ||| |||| Sbjct 29503 AGGCGTGGCGTTTGCTTTCTTATCGGTAATGGAGAATGCAGTGGCAATGTTCGCTTCGGT 29562 Query 50986 GGCGTACTCTCAGCTCTACAAAAACACTCTGGACACACAGTTT-TCAAATGCCACATTCT 51044 | ||||||||||| ||||| || || |||||| ||||| ||| || | ||| | Sbjct 29563 GATATACTCTCAGCTGTACAAGGCGACGCTCGACACA-AGTTTCATAAACGCTATATTTT 29621 Query 51045 ACCTGACCGTTGGCAC 51060 |||| ||| | ||||| Sbjct 29622 ACCTTACCTTCGGCAC 29637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740982676374360