Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5066 116 3e-21 >seq5066 Length=19128 Score = 116 bits (128), Expect = 3e-21 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| | ||| || |||||||| ||||| |||||| || ||| | ||||| Sbjct 18832 AACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTC 18773 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || ||||| | ||||||||||| || || ||||| ||||||||||| Sbjct 18772 AAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTG 18713 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| || ||| || || |||| ||||||||| ||| || ||||| ||||| || | Sbjct 18712 AATCTTCGCT-TTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCT 18654 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 |||| || ||||| || || ||||| ||||| ||||||| Sbjct 18653 TACCCGTGAGAGTCTTCACGAAAATCTGCAT-CTTGAAAA 18615 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || ||||| || || || || ||| | | ||||||| Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCA 19000 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| |||||||| | |||||||| ||||| || ||||| ||||||||||| | Sbjct 18999 AGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18940 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || |||||| || ||| | || || ||||| | ||| || || | || || ||||| Sbjct 18939 ATCTTTGCT-TTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTT 18881 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| |||||||| || ||||| ||||| Sbjct 18880 ACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362142735458601