Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq566 194 1e-44 seq2668 122 7e-23 seq5066 95.1 1e-14 >seq566 Length=99533 Score = 194 bits (214), Expect = 1e-44 Identities = 638/983 (65%), Gaps = 19/983 (2%) Strand=Plus/Minus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 |||||| | |||| | |||||||| || ||||||| ||| || || | || || || Sbjct 71252 TTCGTTCGCTATTTCTCTGTAATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCC 71193 Query 100369 GGCAGCTGTGCCTGTGAA---ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACC 100425 | || |||| ||||| || |||||| ||| | || ||||| ||||| || Sbjct 71192 TGTTGCGTTGCCAGTGAAGGGATTGTTGTCCTCGT---ACCCGTGGACGCCAGTCCAGCC 71136 Query 100426 GCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTG-GTTCGTGA 100484 || |||||||| || || || || || || || ||||| ||| || || | | | Sbjct 71135 ACGTCCGTACATTGCCACTCCGACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAA 71076 Query 100485 GCAATTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGA 100544 | | ||| || | ||| || | || || || || ||||| || ||||| | Sbjct 71075 GTATTTT-ACACCAAAATCGGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATA 71017 Query 100545 GAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAA 100604 || || |||| |||| | | ||| ||||| || || || || || || ||||| | Sbjct 71016 AAGGTGTCTGGTGCCCCAGAGTGTCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCA 70957 Query 100605 GAAATATTTTATCGA-GAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCA 100663 | || || | || | | || ||||| || | ||| | || || |||||||| Sbjct 70956 GGAAAATGTGGTCCATGTAG-TTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCC 70898 Query 100664 TAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGTAGCTGG 100723 | || | ||||| || |||||| ||||| | | || ||| | || | | Sbjct 70897 CAACCAGCGCTGATAGCTGATGTCAATTCGTATTTCCTACCAGTTGAGTGAGAAAGTTCG 70838 Query 100724 TCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCG 100783 || ||||| | || | |||||||| | || ||| || |||| || | Sbjct 70837 TCAAGCATTTCACGGAGTTCCTTCATGAGGTTGACGTAAACATCACCGTCT---TCTGGG 70781 Query 100784 TTGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCG 100843 | |||| || ||||| |||||||| || || || |||||||| |||||||| || || Sbjct 70780 CTTCCAAAGGTAGGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCA 70721 Query 100844 TCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTT 100903 || ||||| ||||| || | || || ||||| ||||| || || ||| | | Sbjct 70720 TCGAAAAATTTCCAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAA---GCGAGTTCTC 70664 Query 100904 TCCGCATCGTGCATGAAATAGAA---CGGGTCGGACAACGTCCAGCCGCCGATGGACGGC 100960 | | | || | ||| |||| ||| || | ||| ||||| || || || || || Sbjct 70663 TTGGTCTTGTCAGTAAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGA 70604 Query 100961 AGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTG 101020 ||||| || |||| || | || | || | ||| || |||||||| ||||| ||| Sbjct 70603 AGAATCTTCAGGTCAGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTG 70544 Query 101021 TACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCG 101080 || || || ||||| | || | || || || ||||| |||| || |||||||||||| Sbjct 70543 TATGGTTCATTCCAAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCG 70484 Query 101081 TGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTG 101140 ||||| | ||||| || || ||||| |||| || || || || |||| ||||| Sbjct 70483 TGAATAGATACTTTAAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTT 70424 Query 101141 CCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCG 101200 || || || | |||||| | ||| || || || ||||| || || || || Sbjct 70423 CCTTCGATTTCCTTTAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCA 70364 Query 101201 TACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTAC 101260 |||| || || | |||||||| | || || || || || || || | ||| Sbjct 70363 TACAGAAGGTGAGTTAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAA 70304 Query 101261 ACGCCCCACTCTACAAAATACGC 101283 |||||||| || |||||||| || Sbjct 70303 ACGCCCCATTCCACAAAATAAGC 70281 >seq2668 Length=134947 Score = 122 bits (134), Expect = 7e-23 Identities = 178/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 24873 ACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAA 24932 || |||||||| ||||| || || || || ||| |||| || |||||||| |||||||| Sbjct 30917 ACTTTTTGTACGTAATCCCGCCCTTTTACGAGTTGTACATAGGCGCAGCGATCGAACCAA 30976 Query 24933 AGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAG 24992 | || ||||| | |||||| | || || | |||||| | | ||| ||||| || Sbjct 30977 CGAGCATGTTGCTCCCACGGTACATCGTCGTTCTCCCAATCCCTAAGACCCCCGTCACAA 31036 Query 24993 TAAAAACATTTGACTTTGTCGCTACGG--CCGGTGTAAAAGAAGCCAGCTTCTGCAAGTT 25050 ||||| || || | | || || ||||| || || ||||||||||| ||||||| Sbjct 31037 TAAAAGCACA--ACGTCTTATCTCCGTTACCGGTATAGAAAAAGCCAGCTTCGGCAAGTT 31094 Query 25051 TTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAAACGCGCAGCTT 25110 ||||| ||| |||| || ||| ||||| || |||| ||||| || || || || | Sbjct 31095 CCTCGGGTTTTTGTTTCATACTGCGGGGCCAATCCTTAAAGGTGCGTAATCGAGCGGCCT 31154 Query 25111 CTATCGCATA 25120 || ||||| Sbjct 31155 CTGAAGCATA 31164 >seq5066 Length=19128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | |||||||||||||||||||| || || | | ||| |||| || Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCA 19000 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || || || ||| | || | | ||| ||||| ||| | ||| |||||||| | Sbjct 18999 AGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18940 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | ||| |||||| ||| || ||||| || || |||||| Sbjct 18939 ATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTA 18880 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| | |||||| || ||||| |||||| Sbjct 18879 CCTGTAAGAGTTTTAACGAAAATCTGCATT 18850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414531060421834