Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5066 107 1e-18 >seq5066 Length=19128 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| || || || |||||||| || || ||||| || || | | || || Sbjct 18831 ACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCA 18772 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||||||| ||| || ||||||||||| || | ||| ||||||||||| || | Sbjct 18771 AGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18712 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| | ||| || ||| || || ||| |||| ||| || | ||| || || || Sbjct 18711 ATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTA 18652 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| ||||| || |||||||| ||||| || Sbjct 18651 CCCGTGAGAGTCTTCACGAAAATCTGCATCTT 18620 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | ||| ||||| ||||| ||||| || || || | | | ||| || Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCA 19000 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||| ||| ||| || ||||| || || || | ||| ||||||||||| || | Sbjct 18999 AGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18940 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || | | || || || |||| ||| || || ||||| ||||| Sbjct 18939 ATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTA 18880 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||||||||| |||||||| ||||| Sbjct 18879 CCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318745505172378