Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5066 93.3 3e-14 seq2668 82.4 5e-11 >seq5066 Length=19128 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||||| || ||||||||||| ||||||||| ||| || |||| || Sbjct 18831 ACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCA 18772 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || ||||| ||||| ||||| |||||||| || | || | |||||||| ||| | Sbjct 18771 AGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18712 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || | | | ||||| | || || || || | ||||| || ||| Sbjct 18711 ATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTA 18652 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||||||| || || ||||| Sbjct 18651 CCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || ||| |||||||||||||| || || | ||| | || || Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCA 19000 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| || || ||||| ||||| || || || || | || | |||||||| ||| | Sbjct 18999 AGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18940 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| |||||| | | | |||||| | || || || |||| ||| || |||||| Sbjct 18939 ATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTA 18880 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||| || || || || ||||| Sbjct 18879 CCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 >seq2668 Length=134947 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 11212 TTTAAAACTTGGCCTTTTAGTATGACCCAAAAAGCTGATGACATGGCACAAGCTGGGttt 11271 ||||| |||||| ||||||| |||||| | || || | || ||||||| ||| Sbjct 31134 TTTAAGGATTGGCCCCGCAGTATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGCTTT 31075 Query 11272 ttttATACAGGTAAAGGAGACAGGGTGATTTGTTACTATTGTGACGGAAAGTTGAGTATG 11331 || ||||| ||||| ||||| | | | | || | ||||||||||| | || Sbjct 31074 TTCTATACCGGTAACGGAGATAAGACGTTGTGCTTTTATTGTGACGGGGGTCTTAGGGAT 31015 Query 11332 TGGGAACGCGACGAAGATCCATGGGAGGAACATGCGCGTTGGTATGGCTC-TTGCGCTTT 11390 ||||| |||||| | || |||||| ||||||| ||||||| | | || ||||| | Sbjct 31014 TGGGAGAACGACGATGTACCGTGGGAGCAACATGCTCGTTGGT-TCGATCGCTGCGCCTA 30956 Query 11391 TTTAAAACTGGTGAAAGGTGAAGAGTTTATACAAAAGATTCATTCGGAA 11439 | || |||| || ||||| || | ||||||| || ||||||| Sbjct 30955 TGTACAACTCGTAAAAGGGCGGGATTACGTACAAAAAGTTATTTCGGAA 30907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354741880658628