Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq566 264 9e-66 >seq566 Length=99533 Score = 264 bits (292), Expect = 9e-66 Identities = 642/964 (67%), Gaps = 19/964 (2%) Strand=Plus/Minus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 101076 |||||||| || ||||||| ||| || || | || || || | || |||| ||||| Sbjct 71233 TAATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCAGTGAAG 71174 Query 101077 --ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 101134 || |||||| ||| | || ||||| ||||| || || |||||||| || || Sbjct 71173 GGATTGTTGTCCTCGT---ACCCGTGGACGCCAGTCCAGCCACGTCCGTACATTGCCACT 71117 Query 101135 CCCACAATAATTTTGCGCGGGTCTACGCCCTG-GTTCGTGAGCGATTTAACAGCGTAATC 101193 || || || || || ||||| || || || | | || |||| ||| | |||| Sbjct 71116 CCGACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGT-ATTTTACACCAAAATC 71058 Query 101194 CGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAG 101253 || | || || || || ||||| || ||||| | | || || | ||||| Sbjct 71057 GGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCCCAG 70998 Query 101254 ATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAA 101313 | | ||| ||||| || || ||||| || || ||||| || || || | || | | | Sbjct 70997 AGTGTCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCATGTA 70938 Query 101314 CTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACT 101373 ||||| || ||| | ||||| |||||||| ||| | || || || Sbjct 70937 GTTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGCTGA 70878 Query 101374 TGTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAAC--TCGTCCAGCATTGCGCGCAAT 101431 ||| ||||||||| | | || ||| ||| || ||||| |||||| | || | | Sbjct 70877 TGTCAATTCGTATTTCCTACCAGTTG--AGTGAGAAAGTTCGTCAAGCATTTCACGGAGT 70820 Query 101432 TCTTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTG 101491 || |||| | || ||| ||| |||| |||| | | || | || ||||| Sbjct 70819 TCCTTCATGAGGTTGACGTAAACATCACCGTC---TTCTGGGCTTCCAAAGGTAGGGTTA 70763 Query 101492 GCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACC 101551 |||||||||||||| || ||||||||||| ||||| || || || ||||||||||| Sbjct 70762 GCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGGTT 70703 Query 101552 TGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGCGTCGTGCATATAA 101611 || | || |||||||| || || || || | | || || ||| | | | Sbjct 70702 TGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTCTTGTCAGTAAAAAAG 70643 Query 101612 TAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTG 101671 ||||||| || | ||||||||| || || || || || | ||| || |||| || | Sbjct 70642 AAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTC 70583 Query 101672 GCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGAT 101731 || ||| | ||| || ||||| |||||||||||||| || || ||||||| ||| Sbjct 70582 GCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGAT 70523 Query 101732 ACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCT 101791 | ||||||||| ||||| |||| || ||||| |||||||| |||| |||||||| || Sbjct 70522 AGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCC 70463 Query 101792 GAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCG 101851 || || |||||||||||| | |||| ||||| || || || | | Sbjct 70462 TCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACTG 70403 Query 101852 TCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGAG--AGGT 101909 ||||||| |||||| || |||||||| || || || || |||| || ||||| || | Sbjct 70402 TCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACA--GAAGGTGAGTTAGAT 70345 Query 101910 TGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAAAT 101969 |||| | || || || || || || || | || ||||||||||| ||||||| Sbjct 70344 TGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAAT 70285 Query 101970 ACGC 101973 | || Sbjct 70284 AAGC 70281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419544955567341