Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5066 188 2e-42 seq1957 91.5 3e-13 seq865 87.8 4e-12 >seq5066 Length=19128 Score = 188 bits (208), Expect = 2e-42 Identities = 182/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | |||| || || |||||||| ||||||||||| ||||| ||||| || Sbjct 18852 ATTCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCG 18793 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||| ||| ||||| || || |||||||||||||| | | || ||||| || Sbjct 18792 GATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGG 18733 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| ||||| || ||||| | ||||||| ||||| Sbjct 18732 GGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCA 18673 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| |||||||||||||| || || || || || || |||||||| ||| Sbjct 18672 ACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTTG 18619 Score = 183 bits (202), Expect = 7e-41 Identities = 169/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | || | |||||| || || |||||||||||||| ||||| || | |||||| Sbjct 19063 AAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTC 19004 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || |||||||| || | | ||||||||| || || || |||||||| || Sbjct 19003 TTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTC 18944 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||||||| ||||| || | ||||| |||||| || || || || ||||| Sbjct 18943 TTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGT 18884 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||||| ||||| || || ||||||||| Sbjct 18883 TTTACCTGTAAGAGTTTTAACGAAAATCTGCATT 18850 >seq1957 Length=467265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/169 (72%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 269068 CTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTA 269124 |||||| | || || |||| |||||| || ||||||| || | | | || ||| Sbjct 419437 CTGTGTAAAGAAGAAGGCTGACTGGGCTATGCAATGGATTGCAAGCAAGACTGCAACTTT 419496 Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGC 269184 ||| ||| | | || |||||||| || || ||||| |||||||| || || ||||| Sbjct 419497 CGGTGAACGTATTGTAGCTTTTGCTGCAGTTGAAGGCATATTCTTCTCTGGAAGCTTTGC 419556 Query 269185 CGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTC 269233 | || || ||| | ||||| || || |||||||||||||| |||||| Sbjct 419557 ATCAATATTCTGGCTCAAGAAGAGGGGACTTATGCCAGGATTGACTTTC 419605 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 269085 CTGAATGGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTG 269141 |||| |||||| || ||||||| || | | | || ||| ||| ||| | | || | Sbjct 418792 CTGACTGGGCTATGCAATGGATTGCAAGCAAGACTGCAACTTTCGGTGAACGTATTGTAG 418733 Query 269142 CTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGA 269201 ||||||| || || ||||| |||||||| || || ||||| | || || ||| | | Sbjct 418732 CTTTTGCTGCAGTTGAAGGCATATTCTTCTCTGGAAGCTTTGCATCAATATTCTGGCTCA 418673 Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTC 269233 |||| || || |||||||||||||| |||||| Sbjct 418672 AGAAGAGGGGACTTATGCCAGGATTGACTTTC 418641 >seq865 Length=175398 Score = 87.8 bits (96), Expect = 4e-12 Identities = 170/250 (68%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 238526 AAATGATAGAAGAAAATATATTTACTCTTTAAAACAGCTCGAGAGAGCCGAAACTCACGA 238585 ||| || | ||| | |||||| ||| |||| |||| ||| | |||| | || || || Sbjct 29600 AAAGGACAAAAGGACATATATATACAGTTTAGAACAACTCTCAAAAGCCAAGACCCATGA 29541 Query 238586 TCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTT 238645 | |||||||| | || || ||||| ||||| ||| ||||||||| | ||||| Sbjct 29540 CGACTTATGGAATGCAGCTCAATTACAATTGGTACAGGAAGGGAAAATGCATGGATTCTT 29481 Query 238646 ACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAG 238705 || ||||| ||| ||| || || ||||||||||| || || | || || || | Sbjct 29480 GCGGATGTACTGGTGTAAGAAAATTCTTGAATGGACACCGTCCCCTGAAGATGCACTAAA 29421 Query 238706 ATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGT 238765 |||| ||| || | || ||| | || |||| || | || ||||| || || || Sbjct 29420 ATATGCTATATACTTAAATGATCATTATAGTGTCGATGGAAGAGACCCTAATGGCTATGT 29361 Query 238766 AGGT-TGTAT 238774 ||| ||||| Sbjct 29360 TGGTGTGTAT 29351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151276531315788