Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq566 203 3e-47 seq5066 84.2 2e-11 >seq566 Length=99533 Score = 203 bits (224), Expect = 3e-47 Identities = 645/986 (65%), Gaps = 33/986 (3%) Strand=Plus/Plus Query 30220 GTGGTGGCCGGTTACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTA 30279 || || | || ||| ||||| || ||||| |||||| || | | || | || Sbjct 70272 GTAGTTGGCGCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGC 70331 Query 30280 GTTCCCGTCCCCAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGAT 30339 || || | ||||| || || || ||| ||||||| ||| | || | || ||||||||| Sbjct 70332 GTACCAATTCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGAT 70391 Query 30340 GGTATAAACGATAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGC 30399 || || ||||| || |||||| || | || || | || | ||| |||||| Sbjct 70392 GGCATTAACGACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGC 70451 Query 30400 GCGGGTCGAGAGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCA 30459 ||||| ||||| |||||||| | ||||||||| |||| || | || ||||| Sbjct 70452 AGTGGTCGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCT 70511 Query 30460 CAAAAAGGAGTGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCG 30519 || ||||| | ||||| | || || || ||||| || || || ||||||||| | Sbjct 70512 CAGAAAGGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTC- 70570 Query 30520 ATTAAAAGACAC-AATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAG 30578 ||| ||| | | | || ||||| | |||| | || |||||||| || |||||| || | Sbjct 70571 ATTGAAACAAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACA-TTGG 70629 Query 30579 C-GACCCTTTCTTTAAATTGAGTTCTGCCGA-------AAATCGCGCCGTTTTCGTTGAG 30630 | || || ||||| || | ||| | | | | | ||| |||||||| Sbjct 70630 CTGATCCGTTCTT---CTTTTTTACTGACAAGACCAAGAGAACTCGC----TTCGTTGAC 70682 Query 30631 TCCGCACGAGAGTATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAG 30690 || | ||||| | | || ||||||||||| || || | ||||| || |||||| Sbjct 70683 TCAGTCAAAGAGTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAG 70742 Query 30691 TTTCCGGGCGGTAAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACA 30750 || || || |||||||| ||||| || || ||| |||||| | | || || Sbjct 70743 TTCCCTGGTGGTAAAGGCGCTAACCCTACCTTTGGAAGCCCAGAAGACGGTGATGT---T 70799 Query 30751 TATGTGCAGTTATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGG 30810 || || | | |||| || ||| | |||||||| |||| |||||| | ||| || Sbjct 70800 TACGTCAACCTCATGAAGGAACTCCGTGAAATGCTTGACGAACTTTCTCACTCAACTGGT 70859 Query 30811 AAAAAATACCAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAAT 30870 | |||||| | | || || || || ||||| || | || |||||| ||||| | Sbjct 70860 AGGAAATACGAATTGACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGAC 70919 Query 30871 TATGAAAATGCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGC 30930 || || || ||| | || | || |||||||| | |||| || || || || || Sbjct 70920 TACAGCAAAGCCCAAAACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGA 70979 Query 30931 GCTTGGTCTAAC-ACGGACT-TGGGATATCACACTACACTTTATTCACCCTC----TTGG 30984 |||||||||||| || ||| |||| | || || || |||||| || ||| ||| Sbjct 70980 GCTTGGTCTAACGAC--ACTCTGGGGCACCAGAC-AC-CTTTAT--ACGCTCCAGAATGG 71033 Query 30985 AACGCTGAAGAAAAATATACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTC 31044 || || |||||| |||||| |||| | | ||| | |||||| ||| || Sbjct 71034 AATCCTAAAGAAACTTATACTACCGATTTTGGTGTAAAATACTTGTTAGCTCAAGGTGTG 71093 Query 31045 AATAGTAAGAAAATAGTGCTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCAT 31104 || ||||| || | | | || |||||||||||| | || ||||| || || || Sbjct 71094 AACCCGAAGAAGATCATCGTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTCCAC 71153 Query 31105 GACATAAAAAACAACAATCCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGG 31164 | | ||||||||||||| || || || || || | || ||||| ||| Sbjct 71154 GGGTACGAGGACAACAATCCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAACCTGG 71213 Query 31165 GAAAGTGGAGTTGTAGATTACAAAGA 31190 || || || || ||||||| ||| Sbjct 71214 CAAGACGGTGTAGTCGATTACAGAGA 71239 >seq5066 Length=19128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || |||||||| |||||||||||| || || || | | | || |||| || Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCA 19000 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| || | | || |||||||| ||||| || | | ||| ||||| | Sbjct 18999 AGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18940 Query 48638 ATTTTCTGCTT-GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| || | | | || ||||| | || || |||| ||||| ||||| Sbjct 18939 ATCTT-TGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTT 18881 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || |||||||| || ||||||||||| Sbjct 18880 ACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421208788034261