Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq310 129 3e-25 seq2000 120 2e-22 seq4514 118 6e-22 seq2602 118 6e-22 seq923 118 6e-22 seq3322 116 2e-21 seq2326 114 7e-21 seq1941 114 7e-21 seq1756 104 1e-17 seq7206 98.7 5e-16 >seq310 Length=93067 Score = 129 bits (142), Expect = 3e-25 Identities = 82/90 (91%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||| || | |||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 36579 TAAAAAAACATTATATTGGCCCATGAGAGGATCGAACCCGCGACCTTCGCGTTATTAGCA 36520 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 36519 CGACGCTCTAACCAACTGAGCTAATGGGCC 36490 >seq2000 Length=192766 Score = 120 bits (132), Expect = 2e-22 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| || ||| ||||||| |||||||||| |||||||||| ||||||||||||| Sbjct 116711 ATAAAAATAACAAAAAATATCTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTT 116770 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||| ||||||||||||||||||||| Sbjct 116771 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 116808 Score = 116 bits (128), Expect = 2e-21 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 139812 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 139871 Query 11516 TGAGCTAATGGGCCGTCGACGAT 11538 ||||||||||||||| || ||| Sbjct 139872 TGAGCTAATGGGCCGATGAAGAT 139894 >seq4514 Length=35137 Score = 118 bits (130), Expect = 6e-22 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 31065 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 31124 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||||||||||| Sbjct 31125 CTGAGCTAATGGGCCGT 31141 Score = 114 bits (126), Expect = 7e-21 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||||| | | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 24147 AATAAAAAAT-ATTTCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 24205 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 24206 ACGACGCTCTAACCAACTGAGCTAATGGGCC 24236 >seq2602 Length=44414 Score = 118 bits (130), Expect = 6e-22 Identities = 82/93 (88%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| | || ||| |||||||| |||||||||| ||||||||||||||||||| Sbjct 20334 AATAAAATAATAATTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 20393 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||| |||||||||||||||||||||| Sbjct 20394 ACGACGCTCTAACCAACTGAGCTAATGGGCCGT 20426 >seq923 Length=224408 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||| | | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 83672 AATTAAAATTTATCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 83613 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 83612 GACGCTCTAACCAACTGAGCTAATGGGCC 83584 >seq3322 Length=91881 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 64622 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 64563 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 64562 TGAGCTAATGGGCCGT 64547 >seq2326 Length=178898 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 58248 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 58189 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 58188 TGAGCTAATGGGCCG 58174 >seq1941 Length=39175 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 37753 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 37694 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 37693 TGAGCTAATGGGCCG 37679 >seq1756 Length=220567 Score = 104 bits (114), Expect = 1e-17 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 175839 GGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGG 175898 Query 11528 CCGT 11531 |||| Sbjct 175899 CCGT 175902 >seq7206 Length=3035 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| |||||||||| ||||||| | ||||||||||| ||||||| |||| Sbjct 904 ATTGGCCCATGTGGGGATCGAACCCGCGACCTTTGTGTTATTAGCACAACGCTCTAACCA 845 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 844 ACTGAGCTAATGGGCC 829 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261464872820836