Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= NC_006636.1
Length=15876
Score E
Sequences producing significant alignments: (Bits) Value
seq2024 89.7 5e-14
seq900 78.8 9e-11
>seq2024
Length=174046
Score = 89.7 bits (98), Expect = 5e-14
Identities = 77/93 (83%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 11090 TTCG-TGGAGAACCTTTTAAAATTGGAATTTTAAGTTGCGCTTTTAACAGCAGCTGTGTG 11148
|||| |||||||||| ||| | |||||||||| || | ||||||||||| | || |||
Sbjct 155965 TTCGATGGAGAACCTCTTAGATTTGGAATTTTGAGCTCCGCTTTTAACATGACCTTTGT- 155907
Query 11149 TTGGGCATTCCCTGAGATTTTTTGGGGTGAGAG 11181
| || |||| |||||||| ||||||||||||||
Sbjct 155906 TGGGACATTTCCTGAGATATTTTGGGGTGAGAG 155874
>seq900
Length=525635
Score = 78.8 bits (86), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 13019 TATAATTTAGATGAAAAATATGAAGGAAATAAAA-TATTTGTAACGTGATTGGTCAAATA 13077
||||||| ||||||| |||||| ||| | ||| | || | | ||||||||||||||
Sbjct 437313 TATAATTCAGATGAATAATATGT--GAAGTCAAACTGTTCTTGATATGATTGGTCAAATA 437370
Query 13078 TATCATAAGCATGAAAATATATAT-AATTCTATA 13110
||| |||||||||||||||||| | |||| ||||
Sbjct 437371 TATAATAAGCATGAAAATATATGTAAATTTTATA 437404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 50679958698777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |