Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006636.1 Length=15876 Score E Sequences producing significant alignments: (Bits) Value seq2024 89.7 5e-14 seq900 78.8 9e-11 >seq2024 Length=174046 Score = 89.7 bits (98), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11090 TTCG-TGGAGAACCTTTTAAAATTGGAATTTTAAGTTGCGCTTTTAACAGCAGCTGTGTG 11148 |||| |||||||||| ||| | |||||||||| || | ||||||||||| | || ||| Sbjct 155965 TTCGATGGAGAACCTCTTAGATTTGGAATTTTGAGCTCCGCTTTTAACATGACCTTTGT- 155907 Query 11149 TTGGGCATTCCCTGAGATTTTTTGGGGTGAGAG 11181 | || |||| |||||||| |||||||||||||| Sbjct 155906 TGGGACATTTCCTGAGATATTTTGGGGTGAGAG 155874 >seq900 Length=525635 Score = 78.8 bits (86), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 13019 TATAATTTAGATGAAAAATATGAAGGAAATAAAA-TATTTGTAACGTGATTGGTCAAATA 13077 ||||||| ||||||| |||||| ||| | ||| | || | | |||||||||||||| Sbjct 437313 TATAATTCAGATGAATAATATGT--GAAGTCAAACTGTTCTTGATATGATTGGTCAAATA 437370 Query 13078 TATCATAAGCATGAAAATATATAT-AATTCTATA 13110 ||| |||||||||||||||||| | |||| |||| Sbjct 437371 TATAATAAGCATGAAAATATATGTAAATTTTATA 437404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50679958698777