Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006638.1 Length=15230 Score E Sequences producing significant alignments: (Bits) Value seq1125 297 2e-76 >seq1125 Length=62062 Score = 297 bits (328), Expect = 2e-76 Identities = 242/294 (82%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 9272 ACACGCATGATCATCTAATTCTGGCCTAGCATTAGATCCAACATTATCAGAAGCCTGCGC 9331 ||||||| | |||||||| |||||||| ||||||| |||||| || ||||||||| | Sbjct 59912 ACACGCACGGTCATCTAACTCTGGCCTCACATTAGAGCCAACAGTACTTGAAGCCTGCTC 59853 Query 9332 TCTCTCAGTAATTGATAAACAAACACTCAGTGCTTTTCTGTTGAATACTGCTAATAATAA 9391 ||||| | |||||| |||||||||||||||| ||||||||||||||| || ||||| Sbjct 59852 CTTCTCACTTATTGATGAACAAACACTCAGTGCATTTCTGTTGAATACTTCTGTTAATAG 59793 Query 9392 TCGTCGTGCTAATGATTTGCAATCTTTTGATACTTGCTGACAGTATTTGAGGTCTCCGTA 9451 |||||| ||||||||||||||||||| ||||| |||| ||| |||| ||| ||||| | Sbjct 59792 TCGTCGAGCTAATGATTTGCAATCTTCTGATATTTGCAGACGGTATGCGAGTTCTCCTTG 59733 Query 9452 GCTGACCCAAACACCCCTTTGAGGCCTAAGTTCTATGAGACCTGGCAGATTAGTCCGATA 9511 |||||| ||||||| || ||||| ||||||||| ||| ||||||||||| | || || Sbjct 59732 GCTGACATAAACACCACTATGAGGTATAAGTTCTACGAGTCCTGGCAGATTTTTGCGGTA 59673 Query 9512 CTTCAATGTCCATTTTGTATCATGAGGATCATATTCCGGTGGTAGGACAAAACG 9565 |||||||||||| ||||||||| | |||||| ||||| ||||| ||||| || Sbjct 59672 CTTCAATGTCCACCTTGTATCATACGCATCATACTCCGGCGGTAGAACAAATCG 59619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48612956153199