Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq272 277 3e-70 seq900 89.7 8e-14 >seq272 Length=55764 Score = 277 bits (306), Expect = 3e-70 Identities = 513/755 (68%), Gaps = 4/755 (1%) Strand=Plus/Plus Query 88 AAGTAGACATTGGACGGGAAAAGAGTAACCAAATCCATGTGAAACTTTTTTCTCTTAGAA 147 || || ||||| | || |||| || || |||| ||| ||||||||| || || Sbjct 31316 AAATAAACATTCGGAGGAAAAATTGTTACTAAATTATCGTGGAACTTTTTTTTCGCTAAA 31375 Query 148 ATGTTGTCGACGTACTTAGGTAAGGTCGGATATTTCTTTGAT-TCCTTTACACAATCAAT 206 || | ||||| || | || || || |||||||||| ||| || ||||| |||| || Sbjct 31376 ATATAGTCGATATATTCTGGGAAAGTTGGATATTTCTC-GATATCTTTTACGCAATTGAT 31434 Query 207 GAACAGTTTGTATAGTGACAAAACTCTGTCGAACTCAAGCGAATTGATAGGTTCAAAAGT 266 |||| ||||| || ||||||| |||||| |||||||| || | || | |||| | || Sbjct 31435 AAACAAATTGTAAAGCGACAAAATTCTGTCAAACTCAAGAGACTCAATTGTTTCATAGGT 31494 Query 267 AACTTTNNNNNNNNNNNNNNNNNNNNNNNTGCTAATGACTACTTTCTTGGTATTCTTTAC 326 | ||| | ||||||||||||| |||||| ||| || Sbjct 31495 TATTTTTATTTTTTCATGGTCGTCGTCATTATTAATGACTACTTTTTTGGTAACCTTAAC 31554 Query 327 CAATTCCGTGTAGAAAGATTTGTCTTGGTCGATAGCAAAATAGGGACGGAACGTCTTTTC 386 | ||| || ||||| | ||| | ||| ||||| | ||| | || || || || ||||| Sbjct 31555 TAGTTCAGTATAGAATGCTTTATTTTGATCGATGGTGAAAAATGGCCGCAATGTTTTTTC 31614 Query 387 ACAGATATCAAACGTGCCTGTCCCAG-CTTCGGATGCCTCCAAGTCACCCTCAAAGTGCA 445 ||| || |||||| || || | || ||| | | || || | | ||| || | Sbjct 31615 ACATATTTCAAACTTGTCTTTATCACTCTTAGCTTCGCTAAAAATGTCTACGAAA-TGTA 31673 Query 446 TAAGGTGGACGAAGTCATTCAAATGAACTTTCTCCTCAAGAATATCGTCACGCAAAATTC 505 | || || ||||||| |||| |||||| | |||| | ||| |||| || || | Sbjct 31674 ACAAATGTACATAGTCATTTAAATTAACTTTTCCTTCAATTACATCATCACACAGCATCC 31733 Query 506 CCTTGTGATTTAACTTTAGGTAATTCAGCTTGTATAGATTAGATGATTTTTCAATTTCAC 565 | ||||||| ||| | ||| ||||| || || | | |||| | | |||||||| |||| Sbjct 31734 CTTTGTGATCTAATTGTAGATAATTGAGTTTATTCAAATTAAACGGCTTTTCAATCTCAC 31793 Query 566 TGACTAGAAAACCATCTACAGTCTTGAAGATTTTCTCCAACAAATAATAAATTTTCTTTC 625 || ||||| || | || | ||||| ||||| ||||||||||| |||| |||| | Sbjct 31794 ACACAAGAAAGCCGTTCACCTTTTTGAATATTTTTTCCAACAAATAGTAAACCTTCTCTT 31853 Query 626 TCCGTTTTTGGAtttttttCAAAGTCATTACGTAACTTAGTAGTTCTTTTCGTTTCTCGA 685 |||||| || |||| |||||||| |||| | || | || | ||||| | || Sbjct 31854 GACGTTTTGAAATCCTTTTTAAAGTCATAACGTTTCGTATCAAATCGATGCGTTTTTTGA 31913 Query 686 TAGGCTTCAAATCTAGATCATAATTGAACCATGTCAAAATTTCAATCATATAGCGCGCTA 745 || |||||||||| ||||| || || || || | ||| |||||| | |||| Sbjct 31914 CAGTGTTCAAATCTAATTCATACTTAAAATATTGTAATACTTCGATCATACTATGTGCTA 31973 Query 746 CGCTATAATACCCTCTTAGCCGTTCCTGCTTGTAGTGTTGAGGATCATTTTTAAAAATTC 805 |||| || ||| || | ||||| ||| || |||| | |||||||| || ||||| | Sbjct 31974 CGCTGTAGTACATTCGCAAGCGTTCGTGCGTGAAGTGCTTAGGATCATGCTTGAAAATGC 32033 Query 806 CTGAGGACAATTCCACGCAGTACCATAACGCAGTT 840 ||| || ||||| ||||||||||| ||||||||| Sbjct 32034 ATGAAGATAATTCAACGCAGTACCACAACGCAGTT 32068 Score = 212 bits (234), Expect = 1e-50 Identities = 530/806 (66%), Gaps = 9/806 (1%) Strand=Plus/Plus Query 39 GACTTTCTTCACTACCTTTTGATAACGCTCATACACGT-CTTTGATATCAAAGTAGACAT 97 |||||| | | ||| || ||||||| | ||| || | || || | ||| | |||| Sbjct 45644 GACTTTTGTTATTACATTCTGATAACCCGAATATACCTTCTCTGC-AGCAATATGAACAT 45702 Query 98 TGGACGGGAAAAGAGTAACCAAATCCATGTGAAACTTTTTTCTCTTAGAAATGTTGTCGA 157 | | ||||||| ||| ||| | ||| || ||| || || ||||| | || | Sbjct 45703 TTGGAGGGAAAATAGTTACCTTAGTACCGTGGAATTTTATTTTCGCTGAAATATACTCCA 45762 Query 158 CGTACTTAGGTAAGGTCGGATATTTCTTTGATTCCTTTACACAATCAATGAACAGTTTGT 217 || | || || | ||||||||||| | || || || ||| || |||| |||| Sbjct 45763 TATATTGTGGAAAACTTGGATATTTCTTGAAATCTTTCACGTAATTGATAAACAAATTGT 45822 Query 218 ATAGTGACAAAACTCTGTCGAACTCAAGCGAATTGATAGGTTCAAAAGTAACTTTNNNNN 277 | |||||||||| |||||| || ||||| || || | ||| | || | ||| Sbjct 45823 AAAGTGACAAAATTCTGTCAAATTCAAGAACATCAATTGTGTCATACGTTATTTTTATTT 45882 Query 278 NNNNNNNNNNNNNNNNNNTGCTAATGACTACTTTCTTGGTATTCTTTACCAATTCCGTGT 337 | |||| || ||| ||||| || | | ||| |||| Sbjct 45883 TGTCTTTGTCGTCATCATTAATAATAACAACTGCTTTGGTTACGTTGAGTAGTTCAGTGT 45942 Query 338 AGAAAGATTTGTCTTGGTCGATAGCAAAATAGGGACGGAACGTCTTTTCACAGATATCAA 397 |||| | || | ||||||||| | |||| | || ||||| || |||||||| | |||| Sbjct 45943 AGAATGCCTTATTTTGGTCGATGGTAAAAAAAGGCCGGAATGTTTTTTCACATACTTCAA 46002 Query 398 ACGTGCCTGTCCCAGCTTCGGATGC-CTCCAA--GTCACCCTCAAAGTGCATAAGGTGGA 454 || || || | || || ||| | || || |||| | | |||| | || | Sbjct 46003 ACTTGTCTTTATCATTTTTAGATTCGCTGAAAATGTCAACGATA---TGCAACAAATGTA 46059 Query 455 CGAAGTCATTCAAATGAACTTTCTCCTCAAGAATATCGTCACGCAAAATTCCCTTGTGAT 514 | ||||||| ||||||||||| | |||| | ||| |||| || || || ||||||| Sbjct 46060 CATAGTCATTTAAATGAACTTTTCCTTCAACCACATCATCACACAGCATACCTTTGTGAT 46119 Query 515 TTAACTTTAGGTAATTCAGCTTGTATAGATTAGATGATTTTTCAATTTCACTGACTAGAA 574 || | ||| ||||| || || | | |||| | | |||||||| |||| || |||| Sbjct 46120 CCAATTGTAGATAATTGAGTTTATTCAAATTAAACGGCTTTTCAATCTCACACACAAGAA 46179 Query 575 AACCATCTACAGTCTTGAAGATTTTCTCCAACAAATAATAAATTTTCTTTCTCCGTTTTT 634 | || | || | ||||| ||||| |||||||||| |||| |||| | |||||| Sbjct 46180 AGCCGTTCACCTTTTTGAATATTTTTCCCAACAAATAGTAAACCTTCTCTTGACGTTTTG 46239 Query 635 GGAtttttttCAAAGTCATTACGTAACTTAGTAGTTCTTTTCGTTTCTCGATAGGCTTCA 694 || |||| ||| ||| |||| | || | || | ||| | | || || || | Sbjct 46240 AAATCCTTTTTAAA-ACATAACGTTTCGTATCAAATCGATGCGTCTTTTGACAGTTTTTA 46298 Query 695 AATCTAGATCATAATTGAACCATGTCAAAATTTCAATCATATAGCGCGCTACGCTATAAT 754 |||||| |||||| || || || || | ||| |||||| | |||||||| || | Sbjct 46299 AATCTAAATCATACTTAAAATATTGTAATACTTCGATCATACTATGTGCTACGCTGTAGT 46358 Query 755 ACCCTCTTAGCCGTTCCTGCTTGTAGTGTTGAGGATCATTTTTAAAAATTCCTGAGGACA 814 || || | ||||| ||| || |||| | |||||||| || ||||| | ||| || | Sbjct 46359 ACATTCGCAAGCGTTCGTGCGTGAAGTGCTTAGGATCATGCTTGAAAATGCATGAAGATA 46418 Query 815 ATTCCACGCAGTACCATAACGCAGTT 840 |||| ||||||||||| ||||||||| Sbjct 46419 ATTCAACGCAGTACCACAACGCAGTT 46444 Score = 208 bits (230), Expect = 1e-49 Identities = 481/725 (66%), Gaps = 12/725 (2%) Strand=Plus/Plus Query 133 TTTTTTCTCTTAGAAATGTTGTCGACGTACTTAGGTAAGGTCGGATATTTCTTTGATTCC 192 |||||| ||||| |||| | |||| | | | | || || ||||| |||| || || Sbjct 18228 TTTTTTTTCTTAAAAATATACTCGATGAATTCTTGAAAAGTTGGATACTTCTCGGAATCT 18287 Query 193 TTTACACAATCAATGAACAGTTTGTATAGTGACAAAACTCTGTCGAACTCAAGCGAATTG 252 || || |||| || || | ||||| ||||| |||| ||| || || |||| |||| Sbjct 18288 TTCACGCAATTGATAAATAAATTGTAAAGTGATAAAATTCTATCAAATTCAAAAGAATCA 18347 Query 253 ATAGGTTCAAAAGTAACTTTNNNNNNNNNNNNNNNNNNNNNNNTGCTAATGACTACTTTC 312 || | ||| || || | ||| | | ||||| |||||| Sbjct 18348 ATTGTTTCGAAGGTTATTTTCATTTTATTTTCATCGTCGTCGTTATTGATGACAACTTTC 18407 Query 313 TTGGTATTCTTTACCAATTCCGTGTAGAAAGATTTGTCTTGGTCGATAGCAAAATAGGGA 372 || ||| || || | ||| |||| || || | | |||||| || | ||||| || Sbjct 18408 TTAGTAACATTAACTACTTCACTGTAAAATGACCTATTTTGGTCAATGGTGAAATAAGGT 18467 Query 373 CGGAACGTCTTTTCACAGATATCAAACGTGCCTGTCCCAGCTTCGGATGCCTCCAAGTCA 432 | || || |||||||| |||| | || | | | | || | | ||| | Sbjct 18468 CTAAATGTTTTTTCACATATATTTATCGGGTTTTGATAATTATTACATTCACCGAAGACG 18527 Query 433 CCCTCAAAGTGCATAAGGTGGACGAAGTCATTCAAATGAACTTTCTCCTCAAGAATATCG 492 | ||| |||| | ||| || | ||||||||||||||||| || |||| | |||| Sbjct 18528 TCTGTAAAATGCAGTAAGTGTACATATTCATTCAAATGAACTTTTTCTTCAATCACATCG 18587 Query 493 TC---ACGCAAAATTCCCTTGTGATTTAACTTTAGGTAATTCAGCTTGTATAGATTAGAT 549 || | ||| | || || |||| || || || ||||| || || | | || | | Sbjct 18588 TCGGAAAGCAGACTT---TTATGATCAAATTTAAGATAATTAAGTTTATTCAAATAAATT 18644 Query 550 GATTTTTCAATTTCACTGACTAGAAAACCATCTACAGTCTTGAAGATTTTCTCCAACAAA 609 | |||||||| |||| |||||| | | || | ||||| ||||| ||||| || Sbjct 18645 GGATTTTCAATCTCACAACTTAGAAAGCAGTTTATTTTTTTGAATATTTTTTCCAATAAG 18704 Query 610 TAATAAATTTTCTTTCTCCGT-TTTTGGAttt-ttttCAAAGTCATTACGTAACTTAGTA 667 || |||| ||||| || ||| ||||||| || |||| || ||| | | |||| || Sbjct 18705 TAGTAAACTTTCT--CTTCGTGTTTTGGAATTCTTTTTAATGTCGAGATATTTCTTATTA 18762 Query 668 GTTCTTTTCGTTTCTCGATAG-GCTTCAAATCTAGATCATAATTGAACCATGTCAAAATT 726 || | ||||| || ||| |||| ||||||| |||||| | ||| || ||| ||| Sbjct 18763 AATCGATACGTTTTTCAATAACGCTT-AAATCTAAATCATAGTGGAAATATTGCAATATT 18821 Query 727 TCAATCATATAGCGCGCTACGCTATAATACCCTCTTAGCCGTTCCTGCTTGTAGTGTTGA 786 || |||||| | | |||||||| |||||| || | ||||||||| || ||| | | Sbjct 18822 TCTATCATAAAATGAGCTACGCTGTAATACATTCGCAAGCGTTCCTGCATGAAGTTTATA 18881 Query 787 GGATCATTTTTAAAAATTCCTGAGGACAATTCCACGCAGTACCATAACGCAGTTGGTAGC 846 ||||||||||| ||||| ||| || ||||| ||||||||||| ||||||||| | || Sbjct 18882 GGATCATTTTTGAAAATATATGAAGATAATTCAACGCAGTACCACAACGCAGTTAGCAGT 18941 Query 847 GTTGT 851 | ||| Sbjct 18942 GATGT 18946 Score = 141 bits (156), Expect = 1e-29 Identities = 264/383 (69%), Gaps = 10/383 (3%) Strand=Plus/Minus Query 6007 TGAAAATGATCGAATCAAATTACTGTACATCGTCACAAATGGCAAGAT---TAGCCGGGA 6063 ||||||| | ||||||||| |||| || | || |||| ||| |||| || Sbjct 47665 TGAAAATAACAAAATCAAATTGTTGTATATTATTACCGATGGTTTGATCGATAGC---GA 47609 Query 6064 AAGTATAGACGAATGTTTGGAATTGAATAAAGAAATAGATTATGAAATGGTTGTTTTCCA 6123 |||| ||| |||||||| || | ||| || | ||| ||||||||| |||||||| || Sbjct 47608 AAGTGCAGATGAATGTTTCGAGCTCAATGAAAACATAAATTATGAAACAGTTGTTTTTCA 47549 Query 6124 TGCATTCAATGAAGACCCGGAAAAAATCGACCTTTTAGTAGCTGCACCTTTCTTCAAGAG 6183 ||||||||| | | ||| ||||||||||| |||||| ||| | || |||| | Sbjct 47548 TGCATTCAACACATGCTTGGATTCAATCGACCTTTCAGTAGCAGCATCATTTCTCAAAAA 47489 Query 6184 CCGTTGCATCGTTTATCACAATACCGAACTTTGTAACCGTACTCATATTTCCAAGGAGTT 6243 || |||||| |||| | || | |||||| || || | ||||||| | || || Sbjct 47488 CCATTGCATTATTTACCGTAACTACAAACTTTACGACAGTGTTAATATTTCTGAAGATTT 47429 Query 6244 TGATTATGACAAGATCAGTAGCGACAACTTCGCAGTTGA-AATGCAACAACTT-ATGTCT 6301 | | |||||||| || | || | ||||| | ||| || | | | ||| || ||| Sbjct 47428 TAACTATGACAATATAACTATTAATAACTTTAAAACTGAGAAAG--ATAGCTTAATATCT 47371 Query 6302 TATATTAAATTGAAGTTCATCAATAAATTCAAACGAGACGCTGATGTTTGGCGAGAAATT 6361 ||||||| ||||||||| || || || || || ||| | | | || || |||||| Sbjct 47370 TATATTAGATTGAAGTTTATTAAAAAGTTTAAGAATGACACACAAGCTTTGCAAGAAATA 47311 Query 6362 GAAAAATTGCATAACCTAAGAAA 6384 || ||||| | || |||||||| Sbjct 47310 GATAAATTAAAGAAGCTAAGAAA 47288 Score = 111 bits (122), Expect = 2e-20 Identities = 217/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 6070 AGACGAATGTTTGGAATTGAATAAAGAAATAGATTATGAAATGGTTGTTTTCCATGCATT 6129 |||| |||||| ||| | |||| ||| || ||||||||| ||||||||||||||||| Sbjct 20093 AGACAGATGTTTCGAACTTAATACAGATATGCATTATGAAACTGTTGTTTTCCATGCATT 20034 Query 6130 CAATGAAGACCCGGAAAAAATCGACCTTTTAGTAGCTGCACCTTTCTTCAAGAGCCGTTG 6189 |||| | | | ||||||||||| ||| |||||| |||| || || |||||||| Sbjct 20033 CAATTCGCGCGTGCATTCAATCGACCTTTCAGTGGCTGCATCTTTTTTTAAAAGCCGTTG 19974 Query 6190 CATCGTTTATCACAATACCGAACTTTGTAACCGTACTCATATTTCCAAGGAGTTTGATTA 6249 ||||| || | || ||||||| | | || | || || | || ||||| || Sbjct 19973 TATCGTATACCGAAACTATGAACTTTTTGATAATATCGACATATCTGAAGATTTTGACTA 19914 Query 6250 TGACAAGATCAGTAGC--GACAACTTCGCAGTTGAAATGCAACAACTTATGTCTTATATT 6307 | | || || || || || |||| | ||||| || | | | ||||| ||| Sbjct 19913 TAATAAAAT-TGT-GCTTGATAACTATTTATCTGAAAAAGAAAATTTAAAATCTTACATT 19856 Query 6308 AAATTGAAGTTCATCAATAAATTCAAACGAGACGCTGATGTTTGGCGAGAAATTGAAAAA 6367 ||||| |||||||| || | | |||| || ||| || | | |||||| || ||| Sbjct 19855 AAATTAAAGTTCATAAAAACACCAAAACATGATGCTCGTGCCTTACAAGAAATAGATAAA 19796 Query 6368 TTGCATAACCTAAGAAA 6384 ||| | || || ||||| Sbjct 19795 TTGAAGAAGCTGAGAAA 19779 >seq900 Length=525635 Score = 89.7 bits (98), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11047 GCGCGCTTTGACTATAGAGTTTGCATATATTTTCATGCTTATGATATATTCAACCAATCA 11106 |||| |||||| |||| | ||| ||||||||||||||||||| ||||||| |||||||| Sbjct 437415 GCGC-CTTTGAATATAAAATTTACATATATTTTCATGCTTATTATATATTTGACCAATCA 437357 Query 11107 CGTTATGAATAGTTTGATGCCACATACATTTCATCTCAATTTTA 11150 | | ||| ||||||| |||||| ||||||| |||| || Sbjct 437356 TATCAAGAACAGTTTGACTTCACATATTATTCATCTGAATTATA 437313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067646909873